{"id":5697,"date":"2023-09-04T03:19:00","date_gmt":"2023-09-04T03:19:00","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/mri-dir\/"},"modified":"2023-09-13T12:03:33","modified_gmt":"2023-09-13T12:03:33","slug":"mri-dir","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/mri-dir\/","title":{"rendered":"MRI-DIR"},"featured_media":0,"template":"","citation-tax":[],"cancer_types":["Head And Neck Squamous Cell Carcinoma"],"citations":[4649,4650,2925],"collection_doi":"10.7937\/K9\/TCIA.2018.3f08iejt","collection_download_info":"Some data in this collection contains images that could potentially be used to reconstruct a human face.  To safeguard the privacy of participants, users must sign and submit a <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\">TCIA Restricted License Agreement<\/a> to <a href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a> before accessing the data.\n\nClick the Versions tab for more info about data releases.","collection_downloads":[5282,5283],"full_export":"<h2 id=\"SyntheticandPhantomMRImagesforDeterminingDeformableImageRegistrationAccuracy(MRIDIR)-Summary\">Summary<\/h2>Two sets of images were created to evaluate deformable image registration accuracy. The first set contains CT, T1-, and T2-weighted images from a porcine phantom. The phantom was implanted with ten 0.35 mm gold markers and then immobilized in a plastic container with movable dividers. The porcine phantom was compressed in 4 different ways and images were acquired in each position. The markers were visible on the CT scans but not the MR scans due to the selected voxel size. Therefore, the markers do not interfere with the registration between MR images and the marker locations can be obtained from the CT images to determine accuracy. The second set of images are synthetic images derived from 28 head and neck squamous cell carcinoma patients who had pre-, mid-, and post-radiotherapy treatment MR scans. From these patients, inter- and intra-patient models were created. Four synthetic pre-treatment images were created by using the inter-patient model on a selected template patient. Four synthetic post-treatment images were created for each synthetic pre-treatment image using the intra-patient model.<p><br\/><\/p><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#372247024517f140395e4a0e977dcb8659db73b9\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#37224702ee50d5c07b0e4e60a2704860e9419547\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#37224702b93af8436f364e1b8d602980e618b741\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#372247020695a81cafd34009818a7e130192158c\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"372247024517f140395e4a0e977dcb8659db73b9\" active=\"true\" name=\"Data Access\" ><h3 id=\"SyntheticandPhantomMRImagesforDeterminingDeformableImageRegistrationAccuracy(MRIDIR)-DataAccess\">Data Access<\/h3><p>\nSome data in this collection contains images that could potentially be used to reconstruct a human face.  To safeguard the privacy of participants, users must sign and submit a <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\" class=\"external-link\" rel=\"nofollow\">TCIA Restricted License Agreement<\/a> to <a href=\"mailto:help@cancerimagingarchive.net\" class=\"external-link\" rel=\"nofollow\">help@cancerimagingarchive.net<\/a> before accessing the data.<\/p><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 52.7907%;\"><colgroup><col style=\"width: 37.0137%;\"\/><col style=\"width: 29.6713%;\"\/><col style=\"width: 33.2848%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\"><br\/><\/th><\/tr><tr><td class=\"confluenceTd\">Images\u00a0a<span style=\"color: rgb(38,44,49);\">nd Radiation Therapy Structures<\/span> (DICOM, 1.4 GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/37224702\/MRI-DIR-06-30-2018-doiJNLP-1UmgA3nc.tcia?version=1&amp;modificationDate=1534787062144&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/www.cancerimagingarchive.net\/nbia-search\/?CollectionCriteria=MRI-DIR\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><\/p><\/div><p><br\/><\/p><p>(Download requires\u00a0the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\"><span class=\"confluence-link\">\n<a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\" class=\"external-link\" rel=\"nofollow\">TCIA Restricted<\/a><br\/><\/span><\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Deformation Vector Fields (MATLAB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/app.box.com\/s\/w9d6njvgf5z68waveq47c0xfsf9ffw6a\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><\/div><div class=\"tabs-pane \" id=\"37224702ee50d5c07b0e4e60a2704860e9419547\" name=\"Detailed Description\" ><h3 id=\"SyntheticandPhantomMRImagesforDeterminingDeformableImageRegistrationAccuracy(MRIDIR)-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p>Collection Statistics<\/p><\/div><\/th><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p><br\/><\/p><\/div><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>CT, MR, RTSTRUCT, Matlab<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Patients<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>9<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\">25<\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>61<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>3596<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Image Size (GB)<\/td><td style=\"text-align: center;\" colspan=\"1\" class=\"confluenceTd\">1.4<\/td><\/tr><\/tbody><\/table><\/div><\/div><div class=\"tabs-pane \" id=\"37224702b93af8436f364e1b8d602980e618b741\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"SyntheticandPhantomMRImagesforDeterminingDeformableImageRegistrationAccuracy(MRIDIR)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy\u00a0<\/h3><p>\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Ger, R.B., Yang, J., Ding, Y., Jacobsen, M.C., Cardenas, C.E., Fuller, C.D., Howell, R.M., Li, H., Stafford, R. J., Zhou, S., &amp; Court, L. (2018). <strong>Data from Synthetic and Phantom MR Images for Determining Deformable Image Registration Accuracy (MRI-DIR) (Version 1)<\/strong>. The Cancer Imaging Archive. DOI: <span style=\"color: rgb(102,102,102);\"><span class=\"nolink\"><a href=\"https:\/\/doi.org\/10.7937\/K9\/TCIA.2018.3f08iejt\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/K9\/TCIA.2018.3f08iejt<\/a> <\/span><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Ger, R. B., Yang, J., Ding, Y., Jacobsen, M. C., Cardenas, C. E., Fuller, C. D., Howell, R. M., Li, H., Stafford, R. J., Zhou, S., &amp; Court, L. E. (2018). <strong>Synthetic head and neck and phantom images for determining deformable image registration accuracy in magnetic resonance imaging. <\/strong>In Medical Physics (Vol. 45, Issue 9, pp. 4315\u20134321). Wiley. <a href=\"https:\/\/doi.org\/10.1002\/mp.13090\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1002\/mp.13090<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., &amp; Prior, F. (2013). <strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository.<\/strong> In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045\u20131057). Springer Science and Business Media LLC. <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/a> PMCID: PMC3824915<\/p><\/div><\/div><h3 id=\"SyntheticandPhantomMRImagesforDeterminingDeformableImageRegistrationAccuracy(MRIDIR)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\">a list of publications<\/a> which leverage our data. <\/span>If you have a publication you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\"> contact TCIA's Helpdesk<\/a>.<\/p><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"372247020695a81cafd34009818a7e130192158c\" name=\"Versions\" ><h3 id=\"SyntheticandPhantomMRImagesforDeterminingDeformableImageRegistrationAccuracy(MRIDIR)-Version1(Current):Updated2018\/06\/30\">Version 1 (Current): Updated 2018\/06\/30<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th colspan=\"1\" class=\"confluenceTh\">Data Type<\/th><th colspan=\"1\" class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images (DICOM,\u00a0 1.4 GB)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/37224702\/MRI-DIR-06-30-2018-doiJNLP-1UmgA3nc.jnlp?version=1&amp;modificationDate=1530371992607&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/www.cancerimagingarchive.net\/nbia-search\/?CollectionCriteria=MRI-DIR\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p>(Download requires\u00a0the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Deformation Vector Fields (MATLAB)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/app.box.com\/s\/w9d6njvgf5z68waveq47c0xfsf9ffw6a\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div>","versions":false,"additional_resources":"","cancer_locations":["Head-Neck","Phantom"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"","collection_status":"Complete","publications_using":"TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a> which leverage our data. If you have a publication you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact TCIA's Helpdesk<\/a>.\n<br\/>","species":["Phantom"],"collection_title":"Synthetic and Phantom MR Images for Determining Deformable Image Registration Accuracy","detailed_description":"","related_analysis_results":false,"subjects":"9","collection_short_title":"MRI-DIR","data_types":["MR","CT","RTSTRUCT"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":["Image Registrations"],"collection_featured_image":false,"collection_summary":"<br\/>\n<br\/>","collection_acknowledgements":"","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5697"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5697"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5697"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}