{"id":5695,"date":"2023-09-04T03:18:54","date_gmt":"2023-09-04T03:18:54","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/prostate-anatomical-edge-cases\/"},"modified":"2023-09-13T12:03:31","modified_gmt":"2023-09-13T12:03:31","slug":"prostate-anatomical-edge-cases","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/prostate-anatomical-edge-cases\/","title":{"rendered":"PROSTATE-ANATOMICAL-EDGE-CASES"},"featured_media":8241,"template":"","citation-tax":[],"cancer_types":["Prostate Cancer"],"citations":[4647,4648,2925],"collection_doi":"10.7937\/QSTF-ST65","collection_download_info":"Click the Versions tab for more info about data releases.","collection_downloads":[5281],"full_export":"<h1 id=\"StressTestingPelvicAutosegmentationAlgorithmsUsingAnatomicalEdgeCases(ProstateAnatomicalEdgeCases)-Summary\">Summary<\/h1><span style=\"color: rgb(32,33,36);\"><span class=\"confluence-embedded-file-wrapper image-right-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail image-right\" draggable=\"false\" height=\"250\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/Public\/Stress-Testing%20Pelvic%20Autosegmentation%20Algorithms%20Using%20Anatomical%20Edge%20Cases%20(Prostate%20Anatomical%20Edge%20Cases)\/gr2_lrg.jpg?api=v2\"><\/span><span style=\"color: rgb(0,0,0);\">In this single institution retrospective study, we reviewed 950 consecutive patients with prostate adenocarcinoma receiving definitive radiotherapy between 2011 and 2019, and identified among them 112 patients with anatomic variations (edge cases) seen on simulation CT and\/or MRI imaging. These variations included hip arthroplasty, prostate median lobe hypertrophy, so-called \u201cdroopy\u201d seminal vesicles, presence of a urinary catheter, and others. A separate cohort of 19 \u201cnormal\u201d cases were randomly selected for inclusion. Prostate, rectum, bladder, and bilateral femoral heads were manually segmented on all CT simulation images (where present) and were ultimately used clinically for radiation treatment planning.<\/span><\/span><\/p><p><span style=\"color: rgb(0,0,0);\">We leveraged this imaging dataset to assess the comparative performance of deep learning, atlas-based, and model-based autosegmentation methods across both normal and edge case cohorts: <span style=\"color: rgb(102,102,102);\"><a href=\"https:\/\/doi.org\/10.1016\/j.phro.2023.100413\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1016\/j.phro.2023.100413<\/a><\/span>.\u00a0 In this paper and i<span class=\"label figure__label\">n the figure on the right, we show the <\/span><span class=\"figure__title__text\">Cross-sectional CT-based anatomy and autosegmentation performance for representative edge cases. <\/span><\/span><\/p><p><span style=\"color: rgb(0,0,0);\"><span class=\"figure__title__text\">A) Hypertrophic prostate edge case. Each panel depicts a focused excerpt from a single CT scan, centered about two different structures (prostate, bladder) in three different planes (axial, sagittal, coronal). Clinician-delineated \u201cground truth\u201d contours (MD) for each structure are shown in red, while atlas-based (AB), model-based (MB), and deep-learning based (DL) autosegmented contours are depicted in green, orange, and blue, respectively. Numerical values represent DSC for the corresponding autosegmented volumes compared to MD volumes. <\/span><\/span><\/p><p><span style=\"color: rgb(0,0,0);\"><span class=\"figure__title__text\">B) So-called \u201cdroopy\u201d seminal vesicles edge case. Each panel depicts a focused excerpt from a single CT scan, centered about the prostate in two different planes (axial, sagittal). All colors and labeling are as in Panel A).<\/span><\/span><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#1457532299ba0f6d7166845d88ea4d96f32f0c097\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#14575322998a69c5e18ad4bc6830e870bde7ad1e6\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#145753229fe28d6f997f64317a780ac52342f7cd0\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#14575322974ca2fa474884476a4946bc25b29b0ed\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"1457532299ba0f6d7166845d88ea4d96f32f0c097\" active=\"true\" name=\"Data Access\" ><h3 id=\"StressTestingPelvicAutosegmentationAlgorithmsUsingAnatomicalEdgeCases(ProstateAnatomicalEdgeCases)-DataAccess\">Data Access<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 53.2649%;\"><colgroup><col style=\"width: 36.1626%;\"\/><col style=\"width: 47.8235%;\"\/><col style=\"width: 16.0373%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\"><p>Images and Radiation Therapy Structures (DICOM, 17 GB)<\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/145753229\/Prostate-Anatomical-Edge-Cases%20May%202023%20manifest.tcia?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=Prostate-Anatomical-Edge-Cases\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p><span style=\"color: rgb(33,37,41);text-decoration: none;\">(Download requires <\/span><a style=\"text-decoration: none;text-align: left;\" href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/4.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 4.0<\/a><\/p><p><br\/><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><p>\n<h3 id=\"StressTestingPelvicAutosegmentationAlgorithmsUsingAnatomicalEdgeCases(ProstateAnatomicalEdgeCases)-AdditionalResourcesforthisDataset\">Additional Resources for this Dataset<\/h3>\n<p>The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.<\/p><\/p><ul style=\"text-align: left;\"><li class=\"auto-cursor-target\"><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=prostate_anatomical_edge_cases\" class=\"external-link\" rel=\"nofollow\">Imaging Data Commons (IDC)<\/a><span>\u00a0<\/span>(Imaging Data)<\/li><\/ul><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"14575322998a69c5e18ad4bc6830e870bde7ad1e6\" name=\"Detailed Description\" ><h3 id=\"StressTestingPelvicAutosegmentationAlgorithmsUsingAnatomicalEdgeCases(ProstateAnatomicalEdgeCases)-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><p>Image Statistics<\/p><\/th><th style=\"text-align: center;\" class=\"confluenceTh\">Radiology Image Statistics<\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>CT, RTSTRUCT<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Patients<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>131<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>131<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>262<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>23,490<\/p><\/td><\/tr><tr><td class=\"confluenceTd\">Images Size (GB)<\/td><td style=\"text-align: center;\" class=\"confluenceTd\">17<\/td><\/tr><\/tbody><\/table><\/div><p><br\/><\/p><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"145753229fe28d6f997f64317a780ac52342f7cd0\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"StressTestingPelvicAutosegmentationAlgorithmsUsingAnatomicalEdgeCases(ProstateAnatomicalEdgeCases)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy<\/h3><p>\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(102,102,102);\"><span style=\"color: rgb(0,0,0);\">Thompson, R. F., Kanwar, A., Merz, B., Cohen, E., Fisher, H., Rana, S., Claunch, C., &amp; Hung, A. (2023). Stress-Testing Pelvic Autosegmentation Algorithms Using Anatomical Edge Cases (Prostate Anatomical Edge Cases) (Version 1) [Data set]. The Cancer Imaging Archive.<\/span> <a href=\"https:\/\/doi.org\/10.7937\/QSTF-ST65\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/QSTF-ST65<\/a><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(102,102,102);\"><span style=\"color: rgb(0,51,102);\"><span style=\"color: rgb(0,0,0);\">Kanwar, A., Merz, B., Claunch, C., Rana, S., Hung, A., &amp; Thompson, R. F. (2023). Stress-testing pelvic autosegmentation algorithms using anatomical edge cases. In Physics and Imaging in Radiation Oncology (Vol. 25, p. 100413). Elsevier BV<\/span>.<\/span> <a href=\"https:\/\/doi.org\/10.1016\/j.phro.2023.100413\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1016\/j.phro.2023.100413<\/a><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(0,0,0);text-decoration: none;\">Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., &amp; Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045\u20131057). Springer Science and Business Media LLC.<\/span><span style=\"color: rgb(102,102,102);text-decoration: none;\"> <\/span><span style=\"color: rgb(102,102,102);text-decoration: none;\"><a title=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\"><span>https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/span><\/a><\/span><\/p><\/div><\/div><h3 id=\"StressTestingPelvicAutosegmentationAlgorithmsUsingAnatomicalEdgeCases(ProstateAnatomicalEdgeCases)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains\u00a0<\/span><a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\">a list of publications<\/a><span> which leverage TCIA data. <\/span> If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\"> contact the TCIA Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"14575322974ca2fa474884476a4946bc25b29b0ed\" name=\"Versions\" ><h3 id=\"StressTestingPelvicAutosegmentationAlgorithmsUsingAnatomicalEdgeCases(ProstateAnatomicalEdgeCases)-Version1(Current):Updated2023\/05\/18\">Version 1 (Current): Updated 2023\/05\/18<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><col\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\"><p>Images and Radiation Therapy Structures (DICOM, 17 GB)<\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/145753229\/Prostate-Anatomical-Edge-Cases%20May%202023%20manifest.tcia?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=Prostate-Anatomical-Edge-Cases\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p><span style=\"color: rgb(33,37,41);text-decoration: none;\">(Download requires\u00a0<\/span><span style=\"color: rgb(33,37,41);text-decoration: none;\">the<span>\u00a0<\/span><\/span><a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\" style=\"text-decoration: none;text-align: left;\">NBIA Data Retriever<\/a>)<\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/4.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 4.0<\/a><\/p><p><br\/><\/p><p><br\/><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><p><br\/><\/p><p><br\/><\/p>","versions":false,"additional_resources":"The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.\n \n<ul><li><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=prostate_anatomical_edge_cases\">Imaging Data Commons (IDC)<\/a>\u00a0(Imaging Data)<\/li><\/ul>\n<br\/>","cancer_locations":["Prostate"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"","collection_status":"Complete","publications_using":"TCIA maintains\u00a0<a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a> which leverage TCIA data.  If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact the TCIA Helpdesk<\/a>.","species":["Human"],"collection_title":"Stress-Testing Pelvic Autosegmentation Algorithms Using Anatomical Edge Cases","detailed_description":"<br\/>\n<br\/>","related_analysis_results":false,"subjects":"131","collection_short_title":"Prostate Anatomical Edge Cases","data_types":["CT","RTSTRUCT"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":false,"collection_featured_image":{"ID":"8241","post_author":"6","post_date":"2023-09-13 04:01:28","post_date_gmt":"2023-09-13 04:01:28","post_content":"","post_title":"gr2_lrg","post_excerpt":"","post_status":"inherit","comment_status":"open","ping_status":"closed","post_password":"","post_name":"gr2_lrg","to_ping":"","pinged":"","post_modified":"2023-09-13 12:03:31","post_modified_gmt":"2023-09-13 12:03:31","post_content_filtered":"","post_parent":"5695","guid":"https:\/\/cm.vastapps.dev\/wp-content\/uploads\/gr2_lrg.jpg","menu_order":"0","post_type":"attachment","post_mime_type":"image\/jpeg","comment_count":"0","pod_item_id":"8241"},"collection_summary":"In this single institution retrospective study, we reviewed 950 consecutive patients with prostate adenocarcinoma receiving definitive radiotherapy between 2011 and 2019, and identified among them 112 patients with anatomic variations (edge cases) seen on simulation CT and\/or MRI imaging. These variations included hip arthroplasty, prostate median lobe hypertrophy, so-called \u201cdroopy\u201d seminal vesicles, presence of a urinary catheter, and others. A separate cohort of 19 \u201cnormal\u201d cases were randomly selected for inclusion. Prostate, rectum, bladder, and bilateral femoral heads were manually segmented on all CT simulation images (where present) and were ultimately used clinically for radiation treatment planning.<p>We leveraged this imaging dataset to assess the comparative performance of deep learning, atlas-based, and model-based autosegmentation methods across both normal and edge case cohorts: <a href=\"https:\/\/doi.org\/10.1016\/j.phro.2023.100413\">https:\/\/doi.org\/10.1016\/j.phro.2023.100413<\/a>.\u00a0 In this paper and in the figure on the right, we show the Cross-sectional CT-based anatomy and autosegmentation performance for representative edge cases. <\/p><p>A) Hypertrophic prostate edge case. Each panel depicts a focused excerpt from a single CT scan, centered about two different structures (prostate, bladder) in three different planes (axial, sagittal, coronal). Clinician-delineated \u201cground truth\u201d contours (MD) for each structure are shown in red, while atlas-based (AB), model-based (MB), and deep-learning based (DL) autosegmented contours are depicted in green, orange, and blue, respectively. Numerical values represent DSC for the corresponding autosegmented volumes compared to MD volumes. <\/p><p>B) So-called \u201cdroopy\u201d seminal vesicles edge case. Each panel depicts a focused excerpt from a single CT scan, centered about the prostate in two different planes (axial, sagittal). All colors and labeling are as in Panel A).<\/p>\n<br\/>","collection_acknowledgements":"","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5695"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media\/8241"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5695"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5695"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}