{"id":5693,"date":"2023-09-04T03:18:42","date_gmt":"2023-09-04T03:18:42","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/dro-toolkit\/"},"modified":"2023-09-13T12:03:25","modified_gmt":"2023-09-13T12:03:25","slug":"dro-toolkit","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/dro-toolkit\/","title":{"rendered":"DRO-TOOLKIT"},"featured_media":0,"template":"","citation-tax":[],"cancer_types":["Phantom"],"citations":[4644,4645,2925],"collection_doi":"10.7937\/T062-8262","collection_download_info":"Click the Versions tab for more info about data releases.","collection_downloads":[5276,5277],"full_export":"<h2 id=\"StanfordDROToolkit:DigitalReferenceObjectsforStandardizationofRadiomicFeatures(DROToolkit)-Summary\">Summary<\/h2><div class=\"wiki-content\"><span style=\"color: rgb(33,33,33);\">This is a sample collection of synthetic 3D Digital Reference Objects (DROs) intended for standardization of quantitative imaging feature extraction pipelines. We have developed <a href=\"https:\/\/github.com\/riipl\/dro_cli\" class=\"external-link\" rel=\"nofollow\">a software toolkit<\/a> for the creation of DROs with customizable size, shape, intensity, texture, and margin sharpness values. Using user-supplied input parameters, these objects are defined mathematically as continuous functions, discretized, and then saved as DICOM objects. This collection includes objects with a range of values for the various feature categories and many combinations of these categories.<br\/><br\/><\/span><p><span style=\"font-size: 16.0px;font-weight: bold;\">Acknowledgements<\/span><\/p><p>We would like to acknowledge the individuals and institutions<span style=\"color: rgb(33,33,33);\">\u00a0that contributed to the development and creation of these digital reference objects<\/span>:<\/p><ul><li><span style=\"color: rgb(33,33,33);\">Stanford University School of Medicine, Stanford, California, USA - Akshay<span>\u00a0<\/span> <\/span> <span style=\"color: rgb(33,33,33);\">Jaggi<\/span> <span style=\"color: rgb(33,33,33);\"> <span>\u00a0B.S.\u00a0<\/span>and Sandy Napel PhD from the Department of Radiology<\/span><\/li><li><span style=\"color: rgb(33,33,33);\">University of California, Los Angeles School of Medicine, Los Angeles, California, USA - Michael McNitt-Gray PhD from the Department of Radiology<\/span><\/li><li><span style=\"color: rgb(33,33,33);\">The University of Western Ontario, Department of Medical Biophysics - Sarah Mattonen PhD<\/span><\/li><li><span style=\"color: rgb(33,33,33);\">The National Cancer Institute Quantitative Imaging Network (QIN)<\/span><\/li><\/ul><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#70222146438d0514b97d4735bf00f355b52447cf\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#702221469b8ae343aa9541dfa0b6e1b7618a6b2c\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#70222146a0c445e7c30f436580c717b11ce2b240\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#70222146ce8773075fca42869803775b10c49476\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"70222146438d0514b97d4735bf00f355b52447cf\" active=\"true\" name=\"Data Access\" ><h3 id=\"StanfordDROToolkit:DigitalReferenceObjectsforStandardizationofRadiomicFeatures(DROToolkit)-DataAccess\">Data Access<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 82.396%;\"><colgroup><col style=\"width: 46.0207%;\"\/><col style=\"width: 35.9658%;\"\/><col style=\"width: 17.9781%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">Licence<\/th><\/tr><tr><td class=\"confluenceTd\"><p>Images and Segmentations (DICOM, 5.0 GB)<\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\">\u00a0<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70222146\/DRO%20Toolkit%20April%202020%20TCIA-manifest.tcia?version=1&amp;modificationDate=1586449917460&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=DRO-Toolkit\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p>(Requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a> <span>.<\/span>)<\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\">\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><br\/><\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Images and Segmentations (NIfTI, zip)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70222146\/Stanford%20DRO%20Toolkit-niftis.zip?version=1&amp;modificationDate=1584697627383&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\">\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><br\/><\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><p>\n<h3 id=\"StanfordDROToolkit:DigitalReferenceObjectsforStandardizationofRadiomicFeatures(DROToolkit)-AdditionalResourcesforthisDataset\">Additional Resources for this Dataset<\/h3>\n<p>The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.<\/p><\/p><ul><li class=\"auto-cursor-target\"><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=dro_toolkit\" class=\"external-link\" rel=\"nofollow\">Imaging Data Commons (IDC)<\/a> (Imaging Data)<\/li><\/ul><h3 style=\"text-align: left;\" id=\"StanfordDROToolkit:DigitalReferenceObjectsforStandardizationofRadiomicFeatures(DROToolkit)-ThirdPartyAnalysesofthisDataset\">Third Party Analyses of this Dataset<\/h3><p style=\"text-align: left;\">TCIA encourages the community to<span>\u00a0<\/span><a class=\"external-link\" href=\"http:\/\/www.cancerimagingarchive.net\/analysis-results\/\" style=\"text-decoration: none;\" rel=\"nofollow\">publish your analyses of our datasets<\/a>. Below is a list of such third party analyses published using this Collection:<\/p><ul style=\"text-align: left;\"><li><a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/DOI\/Standardization+in+Quantitative+Imaging%3A+A+Multi-center+Comparison+of+Radiomic+Feature+Values\" style=\"text-decoration: none;\" rel=\"nofollow\">Standardization in Quantitative Imaging: A Multi-center Comparison of Radiomic Feature Values<\/a><\/li><\/ul><\/div><div class=\"tabs-pane \" id=\"702221469b8ae343aa9541dfa0b6e1b7618a6b2c\" name=\"Detailed Description\" ><h3 id=\"StanfordDROToolkit:DigitalReferenceObjectsforStandardizationofRadiomicFeatures(DROToolkit)-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup> <col\/> <col\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><div class=\"tablesorter-header-inner\"><p>Image Statistics<\/p><\/div><\/div><\/th><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><div class=\"tablesorter-header-inner\"><p><br\/><\/p><\/div><\/div><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td class=\"confluenceTd\"><p>CT, SEG<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Participants<\/p><\/td><td class=\"confluenceTd\"><p>32<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td class=\"confluenceTd\"><p>32<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td class=\"confluenceTd\"><p>64<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\"><p>9632<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images Size (GB)<\/td><td colspan=\"1\" class=\"confluenceTd\">5.0 GB<\/td><\/tr><\/tbody><\/table><\/div><p>The detailed description table applies to the DICOM files only. The NIfTI data is not included in this table.<\/p><\/div><div class=\"tabs-pane \" id=\"70222146a0c445e7c30f436580c717b11ce2b240\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"StanfordDROToolkit:DigitalReferenceObjectsforStandardizationofRadiomicFeatures(DROToolkit)-Citations&amp;DataUsagePolicy\"><span style=\"color: rgb(0,0,0);\">Citations &amp; Data Usage Policy<\/span><\/h3><p class=\"auto-cursor-target\"><span style=\"color: rgb(0,0,0);\">\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/span><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Jaggi, A., Mattonen, S. A., McNitt-Gray, M., &amp; Napel, S. (2020). <strong>Stanford DRO Toolkit: Digital Reference Objects for Standardization of Radiomic Features<\/strong> (Version 1) [Data set]. The Cancer Imaging Archive<span style=\"color: rgb(0,0,0);\"><span style=\"color: rgb(102,102,102);\">. <a href=\"https:\/\/doi.org\/10.7937\/T062-8262\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/T062-8262<\/a><\/span><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(32,33,36);\"><span style=\"color: rgb(102,102,102);\"><span style=\"color: rgb(0,0,0);\">Jaggi, A., Mattonen, S. A., McNitt-Gray, M., &amp; Napel, S. (2020). <strong>Stanford DRO Toolkit: Digital Reference Objects for Standardization of Radiomic Features.<\/strong> In Tomography (Vol. 6, Issue 2, pp. 111\u2013117). MDPI AG.<\/span> <a href=\"https:\/\/doi.org\/10.18383\/j.tom.2019.00030\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.18383\/j.tom.2019.00030<\/a><\/span><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F.\u00a0<strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Grant Citations<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><ul><li>David Geffen School of Medicine at UCLA - U01CA181156<\/li><li>Stanford University School of Medicine \u2013 U01CA187947 and U24CA180927<\/li><li>University of Michigan - U01CA232931<\/li><li>University of Washington \u2013 R50CA211270, U01CA148131<\/li><li>University of South Florida - U24CA180927, U01CA200464<\/li><li>Moffitt Cancer Center \u2013 U01CA143062, U01CA200464, P30CA076292<\/li><li>UC San Francisco - U01CA225427<\/li><li>BC Cancer Research Centre - NSERC Discovery Grant: RGPIN-2019-06467<\/li><li>Columbia University- U01CA225431<\/li><li>Center for Biomedical Image Computing and Analytics at the University of Pennsylvania - U24CA189523, R01NS042645<\/li><li>Massachusetts General Hospital- U01CA154601, U24CA180927<\/li><\/ul><\/div><\/div><h3 id=\"StanfordDROToolkit:DigitalReferenceObjectsforStandardizationofRadiomicFeatures(DROToolkit)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains<\/span> <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\"> a list of publications<\/a> <span> which leverage TCIA data. <\/span> If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\"> contact the TCIA Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"70222146ce8773075fca42869803775b10c49476\" name=\"Versions\" ><h3 id=\"StanfordDROToolkit:DigitalReferenceObjectsforStandardizationofRadiomicFeatures(DROToolkit)-Version1(Current):Updated2020\/04\/09\">Version 1 (Current): Updated 2020\/04\/09<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 49.9992%;\"><colgroup> <col style=\"width: 65.9341%;\"\/> <col style=\"width: 33.8392%;\"\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\"><span>Data Type<\/span><\/th><th class=\"confluenceTh\"><span>Download all or Query\/Filter<\/span><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Images and Segmentations (DICOM, 5.0 GB)<\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\">\u00a0<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70222146\/DRO%20Toolkit%20April%202020%20TCIA-manifest.tcia?version=1&amp;modificationDate=1586449917460&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=DRO-Toolkit\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><span class=\"confluence-link\"> <\/span>\u00a0<\/p><p>(Requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a> <span>.<\/span>)<\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Images (NIfTI, zip)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70222146\/Stanford%20DRO%20Toolkit-niftis.zip?version=1&amp;modificationDate=1584697627383&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><\/div><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p>","versions":false,"additional_resources":"The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.\n \n<ul><li><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=dro_toolkit\">Imaging Data Commons (IDC)<\/a> (Imaging Data)<\/li><\/ul>","cancer_locations":["Phantom"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"TCIA encourages the community to\u00a0<a href=\"http:\/\/www.cancerimagingarchive.net\/analysis-results\/\">publish your analyses of our datasets<\/a>. Below is a list of such third party analyses published using this Collection:\n<ul><li><a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/DOI\/Standardization+in+Quantitative+Imaging%3A+A+Multi-center+Comparison+of+Radiomic+Feature+Values\">Standardization in Quantitative Imaging: A Multi-center Comparison of Radiomic Feature Values<\/a><\/li><\/ul>","collection_status":"Complete","publications_using":"TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\"> a list of publications<\/a>  which leverage TCIA data.  If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact the TCIA Helpdesk<\/a>.","species":["Human"],"collection_title":"Stanford DRO Toolkit: Digital Reference Objects for Standardization of Radiomic Features","detailed_description":"The detailed description table applies to the DICOM files only. The NIfTI data is not included in this table.","related_analysis_results":false,"subjects":"32","collection_short_title":"DRO-Toolkit","data_types":["CT","SEG"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":false,"collection_featured_image":false,"collection_summary":"This is a sample collection of synthetic 3D Digital Reference Objects (DROs) intended for standardization of quantitative imaging feature extraction pipelines. We have developed <a href=\"https:\/\/github.com\/riipl\/dro_cli\">a software toolkit<\/a> for the creation of DROs with customizable size, shape, intensity, texture, and margin sharpness values. Using user-supplied input parameters, these objects are defined mathematically as continuous functions, discretized, and then saved as DICOM objects. This collection includes objects with a range of values for the various feature categories and many combinations of these categories.<br\/><br\/>\nAcknowledgements\nWe would like to acknowledge the individuals and institutions\u00a0that contributed to the development and creation of these digital reference objects:\n<ul><li>Stanford University School of Medicine, Stanford, California, USA - Akshay\u00a0  Jaggi  \u00a0B.S.\u00a0and Sandy Napel PhD from the Department of Radiology<\/li><li>University of California, Los Angeles School of Medicine, Los Angeles, California, USA - Michael McNitt-Gray PhD from the Department of Radiology<\/li><li>The University of Western Ontario, Department of Medical Biophysics - Sarah Mattonen PhD<\/li><li>The National Cancer Institute Quantitative Imaging Network (QIN)<\/li><\/ul>","collection_acknowledgements":"","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5693"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5693"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5693"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}