{"id":5683,"date":"2023-09-04T03:17:45","date_gmt":"2023-09-04T03:17:45","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/meningioma-seg-class\/"},"modified":"2023-09-13T12:02:54","modified_gmt":"2023-09-13T12:02:54","slug":"meningioma-seg-class","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/meningioma-seg-class\/","title":{"rendered":"MENINGIOMA-SEG-CLASS"},"featured_media":8189,"template":"","citation-tax":[],"cancer_types":["Meningioma"],"citations":[4625,4626,2925],"collection_doi":"10.7937\/0TKV-1A36","collection_download_info":"Some data in this collection contains images that could potentially be used to reconstruct a human face.  To safeguard the privacy of participants, users must sign and submit a <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\">TCIA Restricted License Agreement<\/a> to <a href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a> before accessing the data.\n\nClick the Versions tab for more info about data releases.\n<br\/>","collection_downloads":[5246,5247],"full_export":"<h1 id=\"SegmentationandClassificationofGradeIandIIMeningiomasfromMagneticResonanceImaging:AnOpenAnnotatedDataset(MeningiomaSEGCLASS)-Summary\">Summary<\/h1><p style=\"text-align: left;\"><span style=\"color: rgb(0,0,0);\"><span class=\"confluence-embedded-file-wrapper image-right-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image image-right\" draggable=\"false\" height=\"250\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/Public\/Segmentation%20and%20Classification%20of%20Grade%20I%20and%20II%20Meningiomas%20from%20Magnetic%20Resonance%20Imaging:%20An%20Open%20Annotated%20Dataset%20(Meningioma-SEG-CLASS)\/TCIA%20Meningioma_NEW.png?api=v2\"><\/span>The study included 96 consecutive treatment na\u00efve patients with intracranial meningiomas treated with surgical resection from 2010 to 2019. All patients had pre-operative T1, T1-CE, and T2-FLAIR MR images with subsequent subtotal or gross total resection of pathologically confirmed grade I or grade II meningiomas. A neuropathology team reviewed histopathology, including two subspecialty trained neuropathologists and one neuropathology fellow. The meningioma grade was confirmed based on current classification guidelines, most recently described in the 2016 WHO Bluebook. Clinical information includes grade, subtype, type of surgery, tumor location, and atypical features. Meningioma labels on T1-CE and T2-FLAIR images will also be provided in DICOM format. The hyperintense<span>\u00a0<\/span>T1-contrast enhancing\u00a0tumor<span>\u00a0<\/span>and<span>\u00a0<\/span>hyperintense<span>\u00a0<\/span>T2-FLAIR and\u00a0tumor\u00a0were manually contoured on each MRI and reviewed by a central nervous system radiation oncologist specialist.<\/span><\/p><p><br\/><\/p><p><br\/><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#13307197205162a1cd631405587dec16c83836772\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#133071972c543f96740ec41b2bf51a6e8fa856c51\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#1330719725c7dc1b51f2c4710b2da135e224718f9\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#133071972d6e2d227b3b54e73a3dd44d1025dd180\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"13307197205162a1cd631405587dec16c83836772\" active=\"true\" name=\"Data Access\" ><h3 id=\"SegmentationandClassificationofGradeIandIIMeningiomasfromMagneticResonanceImaging:AnOpenAnnotatedDataset(MeningiomaSEGCLASS)-DataAccess\">Data Access<\/h3><p>\nSome data in this collection contains images that could potentially be used to reconstruct a human face.  To safeguard the privacy of participants, users must sign and submit a <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\" class=\"external-link\" rel=\"nofollow\">TCIA Restricted License Agreement<\/a> to <a href=\"mailto:help@cancerimagingarchive.net\" class=\"external-link\" rel=\"nofollow\">help@cancerimagingarchive.net<\/a> before accessing the data.<\/p><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 73.1495%;\"><colgroup><col style=\"width: 24.1292%;\"\/><col style=\"width: 52.5029%;\"\/><col style=\"width: 23.3348%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\"><p>Images and Radiation Therapy Structures (DICOM, 9.0 GB)<\/p><p><br\/><\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/133071972\/Meningioma%20SEG%20Class%20February%202022%20manifest.tcia?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=Meningioma-SEG-CLASS\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p><span style=\"color: rgb(33,37,41);text-decoration: none;\">(Download requires <\/span><a style=\"text-decoration: none;text-align: left;\" rel=\"nofollow\" href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a>)<\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\" class=\"external-link\" rel=\"nofollow\">TCIA Restricted<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Clinical data (CSV)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/133071972\/Meningioma-SEG-Class%20Clinical%20Data.xlsx?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/4.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 4.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"133071972c543f96740ec41b2bf51a6e8fa856c51\" name=\"Detailed Description\" ><h3 id=\"SegmentationandClassificationofGradeIandIIMeningiomasfromMagneticResonanceImaging:AnOpenAnnotatedDataset(MeningiomaSEGCLASS)-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><p>Image Statistics<\/p><\/th><th class=\"confluenceTh\">Radiology Image Statistics<\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td class=\"confluenceTd\"><p>MR, RTSTRUCT<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Patients<\/p><\/td><td class=\"confluenceTd\"><p>96<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td class=\"confluenceTd\"><p>180<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td class=\"confluenceTd\"><p>674<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\"><p><span style=\"color: rgb(51,51,51);\">47520<\/span><\/p><\/td><\/tr><tr><td class=\"confluenceTd\">Images Size (GB)<\/td><td class=\"confluenceTd\">9 GB<\/td><\/tr><\/tbody><\/table><\/div><\/div><div class=\"tabs-pane \" id=\"1330719725c7dc1b51f2c4710b2da135e224718f9\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"SegmentationandClassificationofGradeIandIIMeningiomasfromMagneticResonanceImaging:AnOpenAnnotatedDataset(MeningiomaSEGCLASS)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy<\/h3><p>\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(102,102,102);\"><span style=\"color: rgb(0,0,0);\">Vassantachart, A., Cao, Y., Shen, Z., Cheng, K., Gribble, M., Ye, J. C., Zada, G., Hurth, K., Mathew, A., Guzman, S., &amp; Yang, W. (2023). Segmentation and Classification of Grade I and II Meningiomas from Magnetic Resonance Imaging: An Open Annotated Dataset (Meningioma-SEG-CLASS) (Version 1) [Data set]. The Cancer Imaging Archive.<\/span> <a href=\"https:\/\/doi.org\/10.7937\/0TKV-1A36\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/0TKV-1A36<\/a><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(102,102,102);\"><span style=\"color: rgb(0,0,0);\">Vassantachart, A., Cao, Y., Gribble, M., Guzman, S., Ye, J. C., Hurth, K., Mathew, A., Zada, G., Fan, Z., Chang, E. L., &amp; Yang, W. (2022). Automatic differentiation of Grade I and II meningiomas on magnetic resonance image using an asymmetric convolutional neural network. In Scientific Reports (Vol. 12, Issue 1). Springer Science and Business Media LLC.<\/span> <a href=\"https:\/\/doi.org\/10.1038\/s41598-022-07859-0\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1038\/s41598-022-07859-0<\/a><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(102,102,102);\"><span style=\"color: rgb(0,0,0);\">Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., &amp; Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045\u20131057). Springer Science and Business Media LLC. <\/span><a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/a><\/span><\/p><\/div><\/div><h3 id=\"SegmentationandClassificationofGradeIandIIMeningiomasfromMagneticResonanceImaging:AnOpenAnnotatedDataset(MeningiomaSEGCLASS)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains\u00a0<\/span><a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\">a list of publications<\/a><span> which leverage TCIA data. <\/span> If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\"> contact the TCIA Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"133071972d6e2d227b3b54e73a3dd44d1025dd180\" name=\"Versions\" ><h3 id=\"SegmentationandClassificationofGradeIandIIMeningiomasfromMagneticResonanceImaging:AnOpenAnnotatedDataset(MeningiomaSEGCLASS)-Version1(Current):Updated2023\/02\/13\">Version 1 (Current): Updated 2023\/02\/13<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 46.335%;\"><colgroup><col style=\"width: 41.1195%;\"\/><col style=\"width: 33.2967%;\"\/><col style=\"width: 25.5962%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\"><p>Images, Segmentations, and Radiation Therapy Structures (DICOM, 9.0 GB)<\/p><p><br\/><\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/133071972\/Meningioma%20SEG%20Class%20February%202022%20manifest.tcia?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=Meningioma-SEG-CLASS\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><span style=\"color: rgb(33,37,41);text-decoration: none;\">(Download requires\u00a0<\/span><span style=\"color: rgb(33,37,41);text-decoration: none;\">the<span>\u00a0<\/span><\/span><a rel=\"nofollow\" style=\"text-decoration: none;text-align: left;\" href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a>)<\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\" class=\"external-link\" rel=\"nofollow\">TCIA Restricted<\/a><\/p><p><br\/><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Clinical data (CSV)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/133071972\/Meningioma-SEG-Class%20Clinical%20Data.xlsx?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/4.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 4.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><p><br\/><\/p><p><br\/><\/p>","versions":false,"additional_resources":"","cancer_locations":["Brain","Spinal Cord"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"","collection_status":"Complete","publications_using":"TCIA maintains\u00a0<a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a> which leverage TCIA data.  If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact the TCIA Helpdesk<\/a>.","species":["Human"],"collection_title":"Segmentation and Classification of Grade I and II Meningiomas from Magnetic Resonance Imaging: An Open Annotated Dataset","detailed_description":"","related_analysis_results":false,"subjects":"96","collection_short_title":"Meningioma-SEG-CLASS","data_types":["MR","RTSTRUCT"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":["Clinical"],"collection_featured_image":{"ID":"8189","post_author":"6","post_date":"2023-09-13 03:58:42","post_date_gmt":"2023-09-13 03:58:42","post_content":"","post_title":"TCIA-Meningioma_NEW","post_excerpt":"","post_status":"inherit","comment_status":"open","ping_status":"closed","post_password":"","post_name":"tcia-meningioma_new","to_ping":"","pinged":"","post_modified":"2023-09-13 12:02:54","post_modified_gmt":"2023-09-13 12:02:54","post_content_filtered":"","post_parent":"5683","guid":"https:\/\/cm.vastapps.dev\/wp-content\/uploads\/TCIA-Meningioma_NEW.png","menu_order":"0","post_type":"attachment","post_mime_type":"image\/png","comment_count":"0","pod_item_id":"8189"},"collection_summary":"The study included 96 consecutive treatment na\u00efve patients with intracranial meningiomas treated with surgical resection from 2010 to 2019. All patients had pre-operative T1, T1-CE, and T2-FLAIR MR images with subsequent subtotal or gross total resection of pathologically confirmed grade I or grade II meningiomas. A neuropathology team reviewed histopathology, including two subspecialty trained neuropathologists and one neuropathology fellow. The meningioma grade was confirmed based on current classification guidelines, most recently described in the 2016 WHO Bluebook. Clinical information includes grade, subtype, type of surgery, tumor location, and atypical features. Meningioma labels on T1-CE and T2-FLAIR images will also be provided in DICOM format. The hyperintense\u00a0T1-contrast enhancing\u00a0tumor\u00a0and\u00a0hyperintense\u00a0T2-FLAIR and\u00a0tumor\u00a0were manually contoured on each MRI and reviewed by a central nervous system radiation oncologist specialist.\n<br\/>\n<br\/><br\/>","collection_acknowledgements":"","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5683"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media\/8189"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5683"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5683"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}