{"id":5670,"date":"2023-09-04T03:16:50","date_gmt":"2023-09-04T03:16:50","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/opc-radiomics\/"},"modified":"2023-09-13T12:02:24","modified_gmt":"2023-09-13T12:02:24","slug":"opc-radiomics","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/opc-radiomics\/","title":{"rendered":"OPC-RADIOMICS"},"featured_media":0,"template":"","citation-tax":[],"cancer_types":["Oropharyngeal"],"citations":[4608,4609,2925],"collection_doi":"10.7937\/tcia.2019.8dho2gls","collection_download_info":"Some data in this collection contains images that could potentially be used to reconstruct a human face.  To safeguard the privacy of participants, users must sign and submit a <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\">TCIA Restricted License Agreement<\/a> to <a href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a> before accessing the data.\n\nClick the Versions tab for more info about data releases.","collection_downloads":[5220,5221],"full_export":"<h2 id=\"RadiomicBiomarkersinOropharyngealCarcinoma(OPCRadiomics)-Summary\">Summary<\/h2><p><br\/><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Information<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>This collection has been deprecated. <span style=\"color: rgb(51,51,51);\">Data from the collection formerly called OPC-Radiomics has been updated. The data are downloadable but no longer viewable in the Cancer Imaging Archive. Please view the RADCURE page to obtain access to the updated data:<span> <a style=\"text-decoration: none;text-align: left;\" rel=\"nofollow\" href=\"https:\/\/doi.org\/10.7937\/J47W-NM11\" class=\"external-link\">https:\/\/doi.org\/10.7937\/J47W-NM11<\/a><\/span><\/span><span style=\"color: rgb(51,51,51);\">.<\/span><\/p><\/div><\/div><p>Oropharynx cancer is increasing in frequency in North America. More refined risk stratification and treatment personalization strategies are needed to improve cure rates and limit toxicities. Radomic features have shown promise for prognostication in oropharynx cancer based on datasets including hundreds of patients. Clinical outcomes data for oropharynx cancer patients treated at Princess Margaret Cancer Centre is of the highest quality, collected prospectively at the point of care. This data has resulted in the recent AJCC\/UICC 8th edition staging system for oropharynx cancer (first published by O'Sullivan et al. in Lancet Oncology, 2016 [<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed?term=26936027\" class=\"external-link\" rel=\"nofollow\">PMID 26936027<\/a>]). By making publicly available the published data from our institution, which has now been published twice, we will empower researchers to perform meta-analysis and validation exercises of prognostic radiomic models. Ultimately this will lead to more robust models and bring us closer to clinical implementation and impact for our patients.<br\/><\/p><p><strong style=\"letter-spacing: 0.0px;\">Purpose:<\/strong><\/p><p>Distant metastasis (DM) is the main cause of death for patients with human papillomavirus (HPV)-related oropharyngeal cancers (OPC); yet there are few reliable predictors of DM in this disease. The role of quantitative imaging (i.e. radiomic) analysis was examined to determine whether there are primary tumor features discernible on imaging studies that associate with a higher risk of developing DM.\u00a0\u00a0<span>This data collection consists of\u00a0<\/span>oropharynx squamous cell carcinoma.<\/p><p><strong>Methods:<\/strong><\/p><p>Radiotherapy planning CT scans were retrieved for all non-metastatic p16-positive OPC patients treated with radiotherapy or chemoradiotherapy at a single institution between 2005 and 2010. Radiomic biomarkers were derived from each gross tumor volume (GTV). Biomarkers included four representative radiomic features from tumor first order statistics, shape, texture, and wavelet groups as well as a combined four-feature signature. Univariable Cox proportional hazards models for DM risk were identified. Discriminative performance of prognostic univariable and multivariable models was compared using the concordance index (C-index). Subgroup analyses were performed.<\/p><p><strong>Results:<\/strong><\/p><p>There were 300 HPV-related OPC patients who were eligible for the analysis. A total of 36 DM events occurred within a median follow-up of five years. On univariable analysis, top results included the four representative radiomic features (p&lt;0.001), the radiomic signature (p&lt;0.001), tumor stage (p&lt;0.001), tumor diameter (p&lt;0.001), and tumor volume (p&lt;0.001). C-indices of the radiomic features (0.670-0.686), radiomic signature (0.670), stage (0.633), and tumor size metrics (0.653-0.674) demonstrated moderate discrimination of DM risk. Combined clinical-radiomic models yielded significantly improved performance (0.701-0.714; p&lt;0.05). In subgroup analyses, the radiomic biomarkers consistently stratified patients for DM risk, particularly for those cohorts with greater risks (0.663-0.796), such as patients with stage III disease.<\/p><p><strong>Conclusions:<\/strong><\/p><p>Radiomic biomarkers appear to classify DM risk for patients with non-metastatic HPV-related OPC. Radiomic biomarkers could be used either alone or with other clinical characteristics in assignment of DM risk in future HPV-related OPC clinical trials.<\/p><p><strong>Additional References:\u00a0<\/strong><\/p><ul><li>300 patients in this dataset are also a subset of 542 patients from Princess Margaret Cancer Centre published in 2015: <strong>External validation of a prognostic CT-based radiomic signature in oropharyngeal squamous cell carcinoma.<\/strong> PMID:<span style=\"color: rgb(87,87,87);\">\u00a0<\/span> <span class=\"highlight\">26264429<\/span> <span style=\"color: rgb(87,87,87);\">\u00a0<\/span>DOI:<span style=\"color: rgb(87,87,87);\">\u00a0<\/span> <a href=\"https:\/\/doi.org\/10.3109\/0284186X.2015.1061214\" class=\"external-link\" rel=\"nofollow\">10.3109\/0284186X.2015.1061214<\/a>,<ul><li>You can download this subset by clicking <u> <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/33948764\/OPC-Radiomics-300.tcia?version=1&amp;modificationDate=1580495557642&amp;api=v2\" data-linked-resource-id=\"64685712\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"OPC-Radiomics-300.tcia\" data-linked-resource-content-type=\"application\/x-nbia-manifest-file\" data-linked-resource-container-id=\"33948764\" data-linked-resource-container-version=\"51\">here<\/a> <\/u> (Requires<span> the <\/span> <a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a> <span>)<\/span><\/li><\/ul><\/li><li>This dataset is also described in\u00a0<strong>Radiomic Biomarkers to Refine Risk Models for Distant Metastasis in HPV-related Oropharyngeal Carcinoma<\/strong>. PMID:<span style=\"color: rgb(87,87,87);\">\u00a0<\/span>29506884<span style=\"color: rgb(87,87,87);\">\u00a0<\/span>DOI:<span style=\"color: rgb(87,87,87);\">\u00a0<\/span> <a href=\"https:\/\/doi.org\/10.1016\/j.ijrobp.2018.01.057\" class=\"external-link\" rel=\"nofollow\"> <span class=\"highlight\">10.1016\/j.ijrobp.2018.01.057<\/span> <\/a><\/li><\/ul><h3 id=\"RadiomicBiomarkersinOropharyngealCarcinoma(OPCRadiomics)-Acknowledgements\">Acknowledgements<\/h3><p>We would like to acknowledge the individuals and institutions that have provided data for this collection:<\/p><ul><li>Jennifer Yin Yee Kwan MD, Jie Su MSc, Shao Hui Huang MSc MRT(T) MD, Laleh S. Ghoraie PhD, Wei Xu PhD, Biu Chan, Kenneth W. Yip PhD, Meredith Giuliani MBBS MEd FRCPC, Andrew Bayley MD FRCPC, John Kim MD FRCPC, Andrew J. Hope MD FRCPC, Jolie Ringash MD MSc FRCPC, John Cho MD PhD FRCPC, Andrea McNiven PhD MCCPM, Aaron Hansen MBBS FRACP, David Goldstein MD FRCSC, John de Almeida MD MSc FRCSC, Hugo J. Aerts PhD, John N. Waldron MD MSc FRCPC, Benjamin Haibe-Kains PhD, Brian O\u2019Sullivan MB BCh BAO FRCPC, Scott V. Bratman MD PhD FRCPC, Fei-Fei Liu MD FRCPC, Farnoosh Khodakarami, PhD, Katrina Rey-McIntyre, BSc, CCRP.<\/li><\/ul><h3 id=\"RadiomicBiomarkersinOropharyngealCarcinoma(OPCRadiomics)-Forscientificorotherinquiriesaboutthisdataset,pleasecontacttheTCIAHelpdesk.\"><span class=\"highlight\">For scientific or other inquiries about this dataset,<\/span>\u00a0<span class=\"highlight\">please\u00a0<a rel=\"nofollow\" href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" style=\"text-decoration: underline;text-align: left;\">contact the TCIA Helpdesk<\/a><span style=\"color: rgb(33,37,41);\">.<\/span><\/span><\/h3><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#33948764d925b7be6e5f4a3bb34cce6bfbd8f862\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#33948764643e001772f9438abd2dddef437b54d7\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#3394876465f3044774c54eb282f71ccd11316a96\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#3394876428fd63cc64e84044badee63a35607f7d\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"33948764d925b7be6e5f4a3bb34cce6bfbd8f862\" active=\"true\" name=\"Data Access\" ><h3 id=\"RadiomicBiomarkersinOropharyngealCarcinoma(OPCRadiomics)-DataAccess\">Data Access<\/h3><p>\nSome data in this collection contains images that could potentially be used to reconstruct a human face.  To safeguard the privacy of participants, users must sign and submit a <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\" class=\"external-link\" rel=\"nofollow\">TCIA Restricted License Agreement<\/a> to <a href=\"mailto:help@cancerimagingarchive.net\" class=\"external-link\" rel=\"nofollow\">help@cancerimagingarchive.net<\/a> before accessing the data.<\/p><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 58.7861%;\"><colgroup><col style=\"width: 34.8615%;\"\/><col style=\"width: 32.2338%;\"\/><col style=\"width: 32.8746%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Images\u00a0a<span style=\"color: rgb(38,44,49);\">nd Radiation Therapy Structures<\/span> (DICOM, 61.75 GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\"> <span class=\"confluence-link\">\u00a0<\/span><\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/33948764\/OPC-Radiomics-606.tcia?version=1&amp;modificationDate=1582649948502&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><span class=\"confluence-link\"><span class=\"confluence-link auto-cursor-target\">\u00a0<\/span> <\/span>\u00a0<a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=OPC-Radiomics\" class=\"external-link\" rel=\"nofollow\">\u00a0<\/a><\/p><p>(Download requires\u00a0the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\"><span class=\"confluence-link\">\n<a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\" class=\"external-link\" rel=\"nofollow\">TCIA Restricted<\/a><br\/><\/span><\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Clinical (e.g. patient demographics, outcomes)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/33948764\/Clinical%20data%20list_OPC%20%28606%29%20v3.xlsx?version=1&amp;modificationDate=1581359182229&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\">\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><br\/><\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><\/div><div class=\"tabs-pane \" id=\"33948764643e001772f9438abd2dddef437b54d7\" name=\"Detailed Description\" ><h3 id=\"RadiomicBiomarkersinOropharyngealCarcinoma(OPCRadiomics)-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup> <col\/> <col\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p>Collection Statistics<\/p><\/div><\/th><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p><br\/><\/p><\/div><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td class=\"confluenceTd\"><p>CT, RTSTRUCT<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Participants<\/p><\/td><td class=\"confluenceTd\"><p>606<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td class=\"confluenceTd\">606<\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td class=\"confluenceTd\"><p>1220<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\"><p>108,813<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Image Size (GB)<\/td><td colspan=\"1\" class=\"confluenceTd\">61.75<\/td><\/tr><\/tbody><\/table><\/div><h4 id=\"RadiomicBiomarkersinOropharyngealCarcinoma(OPCRadiomics)-SupportingDocumentation\">Supporting Documentation<\/h4><ul><li>300 patients in this dataset are also a subset of 542 patients from Princess Margaret Cancer Centre published in 2015: <strong>External validation of a prognostic CT-based radiomic signature in oropharyngeal squamous cell carcinoma.<\/strong> PMID:<span style=\"color: rgb(87,87,87);\">\u00a0<\/span> <span class=\"highlight\">26264429<\/span> <span style=\"color: rgb(87,87,87);\">\u00a0<\/span>DOI:<span style=\"color: rgb(87,87,87);\">\u00a0<\/span> <a href=\"https:\/\/doi.org\/10.3109\/0284186X.2015.1061214\" class=\"external-link\" rel=\"nofollow\">10.3109\/0284186X.2015.1061214<\/a>\u00a0. You can download just this portion of the Collection using this link:\u00a0 \u00a0\u00a0\u00a0 <br\/>\u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 <br\/>\u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/33948764\/OPC-Radiomics-300.tcia?version=1&amp;modificationDate=1580495557642&amp;api=v2\" data-linked-resource-id=\"64685712\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"OPC-Radiomics-300.tcia\" data-linked-resource-content-type=\"application\/x-nbia-manifest-file\" data-linked-resource-container-id=\"33948764\" data-linked-resource-container-version=\"51\">OPC-Radiomics-300.tcia<\/a> <strong> <span style=\"color: rgb(255,0,0);\"> 30.9 GB<br\/><\/span> <\/strong> <br\/><span style=\"color: rgb(23,43,77);\">to save a &quot;.tcia&quot; manifest file to your computer, which you must open with the<span>\u00a0<\/span> <\/span> <a rel=\"nofollow\" style=\"text-decoration: underline;\" href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a> <span style=\"color: rgb(23,43,77);\">.\u00a0Click\u00a0the<span>\u00a0<\/span> <\/span> <strong>Search<\/strong> <span style=\"color: rgb(23,43,77);\"> <span>\u00a0<\/span>button to open our Data Portal, where you can browse the data collection and\/or download a subset of its contents.\u00a0<\/span> <span style=\"color: rgb(23,43,77);\"> <br\/><\/span><\/li><li><span style=\"color: rgb(23,43,77);\"><span style=\"color: rgb(23,43,77);\">Please note:<\/span><\/span><p><em>For some cases, there are HTV RTSTRUCT information listed, without GTV contours. HTV refers to a preoperative GTV target region, for instance in the setting of tonsillectomy. If there exist both GTV and HTV for a case, then there is probably a postoperative residual tumor seen. <\/em><\/p><em>There are three listed clinical outcome results (columns &quot;Local Failure&quot;, &quot;Regional Failure,&quot; Distant Failure&quot;);\u00a0 &quot;<\/em><em>Persistent&quot; would generally be considered treatment failure. Blank indicates no failure\/recurrence in these columns.<br\/><\/em><\/li><\/ul><\/div><div class=\"tabs-pane \" id=\"3394876465f3044774c54eb282f71ccd11316a96\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"RadiomicBiomarkersinOropharyngealCarcinoma(OPCRadiomics)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy\u00a0<\/h3><p class=\"auto-cursor-target\">\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span>Kwan JYY, Su J, Huang SH, Ghoraie LS, Xu W, Chan B, Yip KW, Giuliani M, Bayley A, Kim J, Hope AJ, Ringash J, Cho J, McNiven A, Hansen A, Goldstein D, de Almeida JR, Aerts HJ, Waldron JN, Haibe-Kains B, O'Sullivan B, Bratman SV, Liu FF.<\/span>\u00a0(2019). <strong> <u>Data from<\/u> Radiomic Biomarkers to Refine Risk Models for Distant Metastasis in Oropharyngeal Carcinoma<\/strong>. The Cancer Imaging Archive. DOI:\u00a0<span style=\"color: rgb(51,51,51);\"> <a href=\"https:\/\/doi.org\/10.7937\/tcia.2019.8dho2gls\" class=\"external-link\" rel=\"nofollow\">10.7937\/tcia.2019.8dho2gls<\/a> <\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span>Kwan JYY, Su J, Huang SH, Ghoraie LS, Xu W, Chan B, Yip KW, Giuliani M, Bayley A, Kim J, Hope AJ, Ringash J, Cho J, McNiven A, Hansen A, Goldstein D, de Almeida JR, Aerts HJ, Waldron JN, Haibe-Kains B, O'Sullivan B, Bratman SV, Liu FF. \u00a0(2018)\u00a0<\/span> <strong>Radiomic Biomarkers to Refine Risk Models for Distant Metastasis in HPV-related Oropharyngeal Carcinoma<\/strong> <span>. International Journal of Radiation Oncology*Biology*Physics, 1-10. DOI: <\/span> <a href=\"https:\/\/doi.org\/10.1016\/j.ijrobp.2018.01.057\" class=\"external-link\" rel=\"nofollow\">10.1016\/j.ijrobp.2018.01.057<\/a> <span> <br\/><\/span> <a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0360301618301299\" class=\"external-link\" rel=\"nofollow\">ScienceDirect link<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F.\u00a0<strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057.\u00a0 DOI: <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">10.1007\/s10278-013-9622-7<\/a><\/p><\/div><\/div><h3 id=\"RadiomicBiomarkersinOropharyngealCarcinoma(OPCRadiomics)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains<a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\"> a list of publications<\/a> which leverage our data. <\/span>If you have a publication you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\"> contact the TCIA Helpdesk<\/a>. At this time the following related publication has been brought to TCIA's attention:<\/p><ol><li>Leijenaar RT, Carvalho S, Hoebers FJ, Aerts HJ, van Elmpt WJ, Huang SH, Chan B, Waldron JN, O'sullivan B, Lambin P. (2015) <span> <strong>External validation of a prognostic CT-based radiomic signature in oropharyngeal squamous cell carcinoma<\/strong>.<\/span> <span>Acta Oncol. <span>54(9):1423-9. <\/span> <\/span>DOI:<span style=\"color: rgb(87,87,87);\">\u00a0<\/span> <a href=\"https:\/\/doi.org\/10.3109\/0284186X.2015.1061214\" class=\"external-link\" rel=\"nofollow\">10.3109\/0284186X.2015.1061214<\/a><\/li><li>Lombardo, E., Kurz, C., Marschner, S., Avanzo, M., Gagliardi, V., Fanetti, G., Franchin, G., Stancanello, J., Corradini, S., Niyazi, M., Belka, C., Parodi, K., Riboldi, M., &amp; Landry, G. (2021). <strong>Distant metastasis time to event analysis with CNNs in independent head and neck cancer cohorts<\/strong>. Scientific Reports, 11(1). DOI: <a href=\"https:\/\/doi.org\/10.1038\/s41598-021-85671-y\" class=\"external-link\" rel=\"nofollow\">10.1038\/s41598-021-85671-y<\/a><\/li><\/ol><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"3394876428fd63cc64e84044badee63a35607f7d\" name=\"Versions\" ><h3 id=\"RadiomicBiomarkersinOropharyngealCarcinoma(OPCRadiomics)-Version1(Current):Updated2020\/01\/29\">Version 1 (Current): Updated 2020\/01\/29<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 28.5972%;\"><colgroup> <col style=\"width: 45.3294%;\"\/> <col style=\"width: 54.6458%;\"\/> <\/colgroup><tbody><tr><th colspan=\"1\" class=\"confluenceTh\">Data Type<\/th><th colspan=\"1\" class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images (DICOM,\u00a0 61.6 GB)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\"> <span class=\"confluence-link\">\u00a0<\/span><\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/pages\/viewpage.action?pageId=33948764#\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><span class=\"confluence-link\"><span class=\"confluence-link auto-cursor-target\">\u00a0<\/span> <\/span>\u00a0<a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=OPC-Radiomics\" class=\"external-link\" rel=\"nofollow\">\u00a0<\/a><\/p><p>(Download requires\u00a0the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Summary clinical data<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/33948764\/Clinical%20data%20list_OPC%20%28606%29%20v3.xlsx?version=1&amp;modificationDate=1581359182229&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><p><br\/><\/p>","versions":false,"additional_resources":"","cancer_locations":["Head-Neck"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"","collection_status":"Complete","publications_using":"TCIA maintains<a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\"> a list of publications<\/a> which leverage our data. If you have a publication you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact the TCIA Helpdesk<\/a>. At this time the following related publication has been brought to TCIA's attention:\n<ol><li>Leijenaar RT, Carvalho S, Hoebers FJ, Aerts HJ, van Elmpt WJ, Huang SH, Chan B, Waldron JN, O'sullivan B, Lambin P. (2015)  <strong>External validation of a prognostic CT-based radiomic signature in oropharyngeal squamous cell carcinoma<\/strong>. Acta Oncol. 54(9):1423-9.  DOI:\u00a0 <a href=\"https:\/\/doi.org\/10.3109\/0284186X.2015.1061214\">10.3109\/0284186X.2015.1061214<\/a><\/li><li>Lombardo, E., Kurz, C., Marschner, S., Avanzo, M., Gagliardi, V., Fanetti, G., Franchin, G., Stancanello, J., Corradini, S., Niyazi, M., Belka, C., Parodi, K., Riboldi, M., &amp; Landry, G. (2021). <strong>Distant metastasis time to event analysis with CNNs in independent head and neck cancer cohorts<\/strong>. Scientific Reports, 11(1). DOI: <a href=\"https:\/\/doi.org\/10.1038\/s41598-021-85671-y\">10.1038\/s41598-021-85671-y<\/a><\/li><\/ol>\n<br\/>","species":["Human"],"collection_title":"Radiomic Biomarkers in Oropharyngeal Carcinoma","detailed_description":"<h4>Supporting Documentation<\/h4>\n<ul><li>300 patients in this dataset are also a subset of 542 patients from Princess Margaret Cancer Centre published in 2015: <strong>External validation of a prognostic CT-based radiomic signature in oropharyngeal squamous cell carcinoma.<\/strong> PMID:\u00a0 26264429 \u00a0DOI:\u00a0 <a href=\"https:\/\/doi.org\/10.3109\/0284186X.2015.1061214\">10.3109\/0284186X.2015.1061214<\/a>\u00a0. You can download just this portion of the Collection using this link:\u00a0 \u00a0\u00a0\u00a0 <br\/>\u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 <br\/>\u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 <a data-linked-resource-container-id=\"33948764\" data-linked-resource-container-version=\"51\" data-linked-resource-content-type=\"application\/x-nbia-manifest-file\" data-linked-resource-default-alias=\"OPC-Radiomics-300.tcia\" data-linked-resource-id=\"64685712\" data-linked-resource-type=\"attachment\" data-linked-resource-version=\"1\" download=\"\" href=\"\/wp-content\/uploads\/OPC-Radiomics-300.tcia\" target=\"_blank\">OPC-Radiomics-300.tcia<\/a> <strong>  30.9 GB<br\/> <\/strong> <br\/>to save a \".tcia\" manifest file to your computer, which you must open with the\u00a0  <a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a> .\u00a0Click\u00a0the\u00a0  <strong>Search<\/strong>  \u00a0button to open our Data Portal, where you can browse the data collection and\/or download a subset of its contents.\u00a0  <br\/><\/li><li>Please note:<p><em>For some cases, there are HTV RTSTRUCT information listed, without GTV contours. HTV refers to a preoperative GTV target region, for instance in the setting of tonsillectomy. If there exist both GTV and HTV for a case, then there is probably a postoperative residual tumor seen. <\/em><\/p><em>There are three listed clinical outcome results (columns \"Local Failure\", \"Regional Failure,\" Distant Failure\");\u00a0 \"<\/em><em>Persistent\" would generally be considered treatment failure. Blank indicates no failure\/recurrence in these columns.<br\/><\/em><\/li><\/ul>","related_analysis_results":false,"subjects":"606","collection_short_title":"OPC-Radiomics","data_types":["CT","RTSTRUCT"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":["Clinical"],"collection_featured_image":false,"collection_summary":"<br\/>\nInformation <div><p>This collection has been deprecated. Data from the collection formerly called OPC-Radiomics has been updated. The data are downloadable but no longer viewable in the Cancer Imaging Archive. Please view the RADCURE page to obtain access to the updated data: <a href=\"https:\/\/doi.org\/10.7937\/J47W-NM11\">https:\/\/doi.org\/10.7937\/J47W-NM11<\/a>.<\/p><\/div>\nOropharynx cancer is increasing in frequency in North America. More refined risk stratification and treatment personalization strategies are needed to improve cure rates and limit toxicities. Radomic features have shown promise for prognostication in oropharynx cancer based on datasets including hundreds of patients. Clinical outcomes data for oropharynx cancer patients treated at Princess Margaret Cancer Centre is of the highest quality, collected prospectively at the point of care. This data has resulted in the recent AJCC\/UICC 8th edition staging system for oropharynx cancer (first published by O'Sullivan et al. in Lancet Oncology, 2016 [<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed?term=26936027\">PMID 26936027<\/a>]). By making publicly available the published data from our institution, which has now been published twice, we will empower researchers to perform meta-analysis and validation exercises of prognostic radiomic models. Ultimately this will lead to more robust models and bring us closer to clinical implementation and impact for our patients.<br\/>\n<strong>Purpose:<\/strong>\nDistant metastasis (DM) is the main cause of death for patients with human papillomavirus (HPV)-related oropharyngeal cancers (OPC); yet there are few reliable predictors of DM in this disease. The role of quantitative imaging (i.e. radiomic) analysis was examined to determine whether there are primary tumor features discernible on imaging studies that associate with a higher risk of developing DM.\u00a0\u00a0This data collection consists of\u00a0oropharynx squamous cell carcinoma.\n<strong>Methods:<\/strong>\nRadiotherapy planning CT scans were retrieved for all non-metastatic p16-positive OPC patients treated with radiotherapy or chemoradiotherapy at a single institution between 2005 and 2010. Radiomic biomarkers were derived from each gross tumor volume (GTV). Biomarkers included four representative radiomic features from tumor first order statistics, shape, texture, and wavelet groups as well as a combined four-feature signature. Univariable Cox proportional hazards models for DM risk were identified. Discriminative performance of prognostic univariable and multivariable models was compared using the concordance index (C-index). Subgroup analyses were performed.\n<strong>Results:<\/strong>\nThere were 300 HPV-related OPC patients who were eligible for the analysis. A total of 36 DM events occurred within a median follow-up of five years. On univariable analysis, top results included the four representative radiomic features (p&lt;0.001), the radiomic signature (p&lt;0.001), tumor stage (p&lt;0.001), tumor diameter (p&lt;0.001), and tumor volume (p&lt;0.001). C-indices of the radiomic features (0.670-0.686), radiomic signature (0.670), stage (0.633), and tumor size metrics (0.653-0.674) demonstrated moderate discrimination of DM risk. Combined clinical-radiomic models yielded significantly improved performance (0.701-0.714; p&lt;0.05). In subgroup analyses, the radiomic biomarkers consistently stratified patients for DM risk, particularly for those cohorts with greater risks (0.663-0.796), such as patients with stage III disease.\n<strong>Conclusions:<\/strong>\nRadiomic biomarkers appear to classify DM risk for patients with non-metastatic HPV-related OPC. Radiomic biomarkers could be used either alone or with other clinical characteristics in assignment of DM risk in future HPV-related OPC clinical trials.\n<strong>Additional References:\u00a0<\/strong>\n<ul><li>300 patients in this dataset are also a subset of 542 patients from Princess Margaret Cancer Centre published in 2015: <strong>External validation of a prognostic CT-based radiomic signature in oropharyngeal squamous cell carcinoma.<\/strong> PMID:\u00a0 26264429 \u00a0DOI:\u00a0 <a href=\"https:\/\/doi.org\/10.3109\/0284186X.2015.1061214\">10.3109\/0284186X.2015.1061214<\/a>,<ul><li>You can download this subset by clicking <u> <a data-linked-resource-container-id=\"33948764\" data-linked-resource-container-version=\"51\" data-linked-resource-content-type=\"application\/x-nbia-manifest-file\" data-linked-resource-default-alias=\"OPC-Radiomics-300.tcia\" data-linked-resource-id=\"64685712\" data-linked-resource-type=\"attachment\" data-linked-resource-version=\"1\" download=\"\" href=\"\/wp-content\/uploads\/OPC-Radiomics-300.tcia\" target=\"_blank\">here<\/a> <\/u> (Requires the  <a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a> )<\/li><\/ul><\/li><li>This dataset is also described in\u00a0<strong>Radiomic Biomarkers to Refine Risk Models for Distant Metastasis in HPV-related Oropharyngeal Carcinoma<\/strong>. PMID:\u00a029506884\u00a0DOI:\u00a0 <a href=\"https:\/\/doi.org\/10.1016\/j.ijrobp.2018.01.057\"> 10.1016\/j.ijrobp.2018.01.057 <\/a><\/li><\/ul>","collection_acknowledgements":"We would like to acknowledge the individuals and institutions that have provided data for this collection:\n<ul><li>Jennifer Yin Yee Kwan MD, Jie Su MSc, Shao Hui Huang MSc MRT(T) MD, Laleh S. Ghoraie PhD, Wei Xu PhD, Biu Chan, Kenneth W. Yip PhD, Meredith Giuliani MBBS MEd FRCPC, Andrew Bayley MD FRCPC, John Kim MD FRCPC, Andrew J. Hope MD FRCPC, Jolie Ringash MD MSc FRCPC, John Cho MD PhD FRCPC, Andrea McNiven PhD MCCPM, Aaron Hansen MBBS FRACP, David Goldstein MD FRCSC, John de Almeida MD MSc FRCSC, Hugo J. Aerts PhD, John N. Waldron MD MSc FRCPC, Benjamin Haibe-Kains PhD, Brian O\u2019Sullivan MB BCh BAO FRCPC, Scott V. Bratman MD PhD FRCPC, Fei-Fei Liu MD FRCPC, Farnoosh Khodakarami, PhD, Katrina Rey-McIntyre, BSc, CCRP.<\/li><\/ul>\n<h3>For scientific or other inquiries about this dataset,\u00a0please\u00a0<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact the TCIA Helpdesk<\/a>.<\/h3>\n<br\/>","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5670"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5670"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5670"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}