{"id":5660,"date":"2023-09-04T03:16:01","date_gmt":"2023-09-04T03:16:01","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/qin-breast-02\/"},"modified":"2023-09-13T12:01:59","modified_gmt":"2023-09-13T12:01:59","slug":"qin-breast-02","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/qin-breast-02\/","title":{"rendered":"QIN-BREAST-02"},"featured_media":0,"template":"","citation-tax":[],"cancer_types":["Breast Cancer"],"citations":[4587,2925],"collection_doi":"10.7937\/TCIA.2019.4cfm06rr","collection_download_info":"When you have a TCIA account, please email to <a href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a> to request access to these data.\n\nClick the Versions tab for more info about data releases.","collection_downloads":[5201,5202,5203],"full_export":"<h2 id=\"QINBREAST02-Summary\">Summary<\/h2><div class=\"wiki-content\"><p><br\/><\/p><span style=\"color: rgb(0,0,0);\">This data is from a multi-site, multi-parametric quantitative MRI study of adult (18+ years old) females diagnosed with invasive breast cancer.\u00a0 Subjects all had a lesion size &gt;1cm in longest dimension and were undergoing neoadjuvant therapy. Participants were scanned prior to any therapy and then 2-3 times after the initiation of neoadjuvant therapy, depending upon their treatment regimen.\u00a0All data sets were acquired with a research-only protocol, including: DWI (SE EPI), OGSE, qMT, B0 map, multi-flip T1 map, Bloch-Siegert B1 map, DCE, and a T1-weighted anatomical image.<\/span><\/p><p><span style=\"color: rgb(0,0,0);\">This dataset is an extension of the original <span style=\"color: rgb(51,102,255);\"><a href=\"https:\/\/wiki.cancerimagingarchive.net\/pages\/viewpage.action?pageId=18513974\">QIN-BREAST<\/a><\/span> collection, with updated scan protocols and data collected at both Vanderbilt University Medical Center and the University of Chicago to demonstrate reproducible results at multiple sites (both using Philips 3T MR scanners).\u00a0\u00a0<\/span><p><br\/><\/p><p><span style=\"font-size: 16.0px;font-weight: bold;\">Acknowledgements<\/span><\/p><p>We would like to acknowledge the individuals and institutions that have provided data for this collection:<\/p><ul><li><span style=\"color: rgb(23,43,77);\">Thomas E. Yankeelov,\u00a0 Ph.D. (University of Texas at Austin), <\/span><\/li><li><span style=\"color: rgb(23,43,77);\">Gregory S. Karczmar Ph.D. (University of Chicago), <\/span><\/li><li><span style=\"color: rgb(23,43,77);\">Richard G. Abramson, M.D. and Lori Arlinghaus, Ph.D.\u00a0(Vanderbilt University Medical Center)<\/span><br\/><br\/><\/li><\/ul><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#527568877bb6ea5d9d0e46f3bdaddb00ea046a7d\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#52756887b5d0fbc2d0bb476da82d765f72a52b73\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#52756887d6f0fc037a8e4b118bb70b1939955786\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#52756887fdad72ff633348ae8a06b640f423a1d7\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"527568877bb6ea5d9d0e46f3bdaddb00ea046a7d\" active=\"true\" name=\"Data Access\" ><h3 id=\"QINBREAST02-DataAccess\">Data Access<\/h3><p><span class=\"confluence-link\">When you have a TCIA account, please email to <a href=\"mailto:help@cancerimagingarchive.net\" class=\"external-link\" rel=\"nofollow\">help@cancerimagingarchive.net<\/a> to request access to these data.<\/span><\/p><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 82.6963%;\"><colgroup><col style=\"width: 32.8935%;\"\/><col style=\"width: 35.8153%;\"\/><col style=\"width: 31.189%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Images (DICOM, 3.9 GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/52756887\/QIN-BREAST-02_20190408_v1.tcia?version=1&amp;modificationDate=1554747017546&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=QIN-BREAST-02\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><\/p><\/div><p>(Download requires the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\"><br\/><\/span><\/p><p>TCIA restricted<\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Clinical Data (XLSX)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/52756887\/QIN-BREAST-02_clinicalData-Transformed-20191022-Revised20200210.xlsx?version=1&amp;modificationDate=1581525332526&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/><\/p><p><span class=\"confluence-link\">\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Acquisition Scan Parameters (XLSX)\u00a0<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/52756887\/QIN-BREAST-02_ScanParameters.xlsx?version=1&amp;modificationDate=1562781527456&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\">\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/span><\/p><p><br\/><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><\/div><div class=\"tabs-pane \" id=\"52756887b5d0fbc2d0bb476da82d765f72a52b73\" name=\"Detailed Description\" ><h3 id=\"QINBREAST02-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><div class=\"tablesorter-header-inner\"><p>Image Statistics<\/p><\/div><\/div><\/th><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><div class=\"tablesorter-header-inner\"><p><br\/><\/p><\/div><\/div><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td class=\"confluenceTd\"><p>MR<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Patients<\/p><\/td><td class=\"confluenceTd\"><p>13<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td class=\"confluenceTd\"><p>34<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td class=\"confluenceTd\"><p>235<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\"><p>31,790<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images Size (GB)<\/td><td colspan=\"1\" class=\"confluenceTd\">3.9<\/td><\/tr><\/tbody><\/table><\/div><h3 id=\"QINBREAST02-Notallparticipantscompletedallroundsofimaging.Clinicalspreadsheetsareavailable.Acquisitionscanparametertablesareavailable.\">Not all participants completed all rounds of imaging. Clinical spreadsheets are available. Acquisition scan parameter tables are available.<\/h3><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"52756887d6f0fc037a8e4b118bb70b1939955786\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"QINBREAST02-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy<\/h3><p><span style=\"letter-spacing: 0.0px;\"><span style=\"color: rgb(23,43,77);\">\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/span><\/span><\/p><p><span style=\"letter-spacing: 0.0px;\"><strong>Please be sure to acknowledge both this data set and TCIA in publications by including the following citations in your work<\/strong>:<\/span><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Yankeelov TE, Karczmar GS, Abramson RG. (2019) <strong>Data from QIN-BREAST-02[Dataset]<\/strong>. The Cancer Imaging Archive. doi:\u00a0<a href=\"https:\/\/doi.org\/10.7937\/TCIA.2019.4cfm06rr\" class=\"external-link\" rel=\"nofollow\">10.7937\/TCIA.2019.4cfm06rr<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F.\u00a0<strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">10.1007\/s10278-013-9622-7<\/a><\/p><\/div><\/div><h3 style=\"text-align: left;\" id=\"QINBREAST02-AdditionalPublicationResources\">Additional Publication Resources<\/h3><p style=\"text-align: left;\">The Collection authors suggest the below will give context to this dataset:<\/p><ol><li style=\"text-align: left;\">Williams, J. M., Rani, S. D., Li, X., Arlinghaus, L. R., Lee, T.-C., MacDonald, L. R., Partridge, S. C., Kang, H., Whisenant, J. G., Abramson, R. G., Linden, H. M., Kinahan, P. E., &amp; Yankeelov, T. E. (2015). Comparison of prone versus supine 18F-FDG-PET of locally advanced breast cancer: Phantom and preliminary clinical studies. In Medical Physics (Vol. 42, Issue 7, pp. 3801\u20133813). Wiley. <a href=\"https:\/\/doi.org\/10.1118\/1.4921363\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1118\/1.4921363<\/a><\/li><li style=\"text-align: left;\">Li, X., Abramson, R. G., Arlinghaus, L. R., Chakravarthy, A. B., Abramson, V., Mayer, I., Farley, J., Delbeke, D., &amp; Yankeelov, T. E. (2012). An algorithm for longitudinal registration of PET\/CT images acquired during neoadjuvant chemotherapy in breast cancer: preliminary results. In EJNMMI Research (Vol. 2, Issue 1). Springer Science and Business Media LLC. <a href=\"https:\/\/doi.org\/10.1186\/2191-219x-2-62\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1186\/2191-219x-2-62<\/a><\/li><li style=\"text-align: left;\">Yankeelov, T. E., Peterson, T. E., Abramson, R. G., Garcia-Izquierdo, D., Arlinghaus, L. R., Li, X., Atuegwu, N. C., Catana, C., Manning, H. C., Fayad, Z. A., &amp; Gore, J. C. (2012). Simultaneous PET\u2013MRI in oncology: a solution looking for a problem? In Magnetic Resonance Imaging (Vol. 30, Issue 9, pp. 1342\u20131356). Elsevier BV. <a href=\"https:\/\/doi.org\/10.1016\/j.mri.2012.06.001\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1016\/j.mri.2012.06.001<\/a><\/li><\/ol><h3 id=\"QINBREAST02-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains <\/span><a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\">a list of publications<\/a><span> which leverage TCIA data. <\/span> If you have a manuscript you'd like to add please <a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\">contact TCIA's Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"52756887fdad72ff633348ae8a06b640f423a1d7\" name=\"Versions\" ><h3 id=\"QINBREAST02-Update2020\/02\/12:Clinicaldatatablehasonecoderevision,text\/numericvalueshavenotchanged.\">Update 2020\/02\/12: Clinical data table has one code revision, text\/numeric values have not changed.<\/h3><h3 id=\"QINBREAST02-Version1(Current):Updated2019\/07\/10\">Version 1 (Current): Updated 2019\/07\/10<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 71.26%;\"><colgroup><col style=\"width: 44.14%;\"\/><col style=\"width: 55.9%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><span>Data Type<\/span><\/th><th class=\"confluenceTh\"><span>Download all or Query\/Filter<\/span><\/th><\/tr><tr><td class=\"confluenceTd\"><span>Images (DICOM, 4 GB)<\/span><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/52756887\/QIN-BREAST-02_20190408_v1.tcia?version=1&amp;modificationDate=1554747017546&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=QIN-BREAST-02\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=QIN-BREAST-02\" class=\"external-link\" rel=\"nofollow\"><br class=\"auto-cursor-target\"\/><\/a><\/p><p>(Download requires the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\"><span>Clinical Data (XLSX)<\/span><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/52756887\/QIN-BREAST-02_clinicalData-Transformed-20191022-Revised20200210.xlsx?version=1&amp;modificationDate=1581525332526&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Acquisition Scan Parameters (XLSX)\u00a0<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/52756887\/QIN-BREAST-02_ScanParameters.xlsx?version=1&amp;modificationDate=1562781527456&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p><span>Added new subjects, 10\/22\/2019 corrected error in clinicaldata spreadsheet.<\/span><\/p><\/div><\/div><\/div><\/div><\/div><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p>","versions":false,"additional_resources":"","cancer_locations":["Breast"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"","collection_status":"Complete","publications_using":"TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a> which leverage TCIA data.  If you have a manuscript you'd like to add please <a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact TCIA's Helpdesk<\/a>.\n<h3>Update 2020\/02\/12: Clinical data table has one code revision, text\/numeric values have not changed.<\/h3>","species":["Human"],"collection_title":"QIN-BREAST-02","detailed_description":"<h3>Not all participants completed all rounds of imaging. Clinical spreadsheets are available. Acquisition scan parameter tables are available.<\/h3>\n<br\/>","related_analysis_results":false,"subjects":"13","collection_short_title":"QIN-BREAST-02","data_types":["MR"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":["Clinical"],"collection_featured_image":false,"collection_summary":"<br\/>\nThis data is from a multi-site, multi-parametric quantitative MRI study of adult (18+ years old) females diagnosed with invasive breast cancer.\u00a0 Subjects all had a lesion size &gt;1cm in longest dimension and were undergoing neoadjuvant therapy. Participants were scanned prior to any therapy and then 2-3 times after the initiation of neoadjuvant therapy, depending upon their treatment regimen.\u00a0All data sets were acquired with a research-only protocol, including: DWI (SE EPI), OGSE, qMT, B0 map, multi-flip T1 map, Bloch-Siegert B1 map, DCE, and a T1-weighted anatomical image.<p>This dataset is an extension of the original <a href=\"\/display\/Public\/QIN-Breast\">QIN-BREAST<\/a> collection, with updated scan protocols and data collected at both Vanderbilt University Medical Center and the University of Chicago to demonstrate reproducible results at multiple sites (both using Philips 3T MR scanners).\u00a0\u00a0<\/p>\n<br\/>\nAcknowledgements\nWe would like to acknowledge the individuals and institutions that have provided data for this collection:\n<ul><li>Thomas E. Yankeelov,\u00a0 Ph.D. (University of Texas at Austin), <\/li><li>Gregory S. Karczmar Ph.D. (University of Chicago), <\/li><li>Richard G. Abramson, M.D. and Lori Arlinghaus, Ph.D.\u00a0(Vanderbilt University Medical Center)<br\/><br\/><\/li><\/ul>","collection_acknowledgements":"","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5660"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5660"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5660"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}