{"id":5639,"date":"2023-09-04T03:14:34","date_gmt":"2023-09-04T03:14:34","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/nsclc-radiomics\/"},"modified":"2023-09-13T12:01:02","modified_gmt":"2023-09-13T12:01:02","slug":"nsclc-radiomics","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/nsclc-radiomics\/","title":{"rendered":"NSCLC-RADIOMICS"},"featured_media":8033,"template":"","citation-tax":[],"cancer_types":["Lung Cancer"],"citations":[4550,4551,2925],"collection_doi":"10.7937\/K9\/TCIA.2015.PF0M9REI","collection_download_info":"Click the Versions tab for more info about data releases.","collection_downloads":[5153,5154],"full_export":"<h2 id=\"NSCLCRadiomics-Summary\">Summary<\/h2><div class=\"sectionColumnWrapper\"><div class=\"sectionMacro\"><div class=\"sectionMacroRow\"><div class=\"columnMacro\" style=\"width:60%;min-width:60%;max-width:60%;\">This collection contains images from 422 non-small cell lung cancer (NSCLC) patients. For these patients pretreatment CT scans,\u00a0manual delineation by a radiation oncologist of the 3D volume of the gross tumor volume and clinical outcome data are available. This dataset refers to the Lung1 dataset of the <a href=\"http:\/\/www.nature.com\/ncomms\/2014\/140603\/ncomms5006\/full\/ncomms5006.html\" class=\"external-link\" rel=\"nofollow\">study published in Nature Communications<\/a>.<p><br\/>In short, this publication applies a radiomic approach to computed tomography data of 1,019 patients with lung or head-and-neck cancer. Radiomics refers to the comprehensive quantification of tumour phenotypes by applying a large number of quantitative image features. In present analysis 440 features quantifying tumour image intensity, shape and texture, were extracted.\u00a0 We found that a large number of radiomic features have prognostic power in independent data sets, many of which were not identified as significant before. Radiogenomics analysis revealed that a prognostic radiomic signature, capturing intra-tumour heterogeneity, was associated with underlying gene-expression patterns. These data suggest that radiomics identifies a general prognostic phenotype existing in both lung and head-and-neck cancer. This may have a clinical impact as imaging is routinely used in clinical practice, providing an unprecedented opportunity to improve decision-support in cancer treatment at low cost.\u00a0<span style=\"color: rgb(33,33,33);\">The DICOM Radiotherapy Structure Sets (RTSTRUCT) and DICOM Segmentation (SEG) files in this data contain a manual delineation by a radiation oncologist of the 3D volume of the primary gross tumor volume (&quot;GTV-1&quot;) and selected anatomical structures (i.e., lung, heart and esophagus). Of note, DICOM SEG objects contain a subset of annotations available in RTSTRUCT.<\/span><br\/><br\/>The dataset described here (Lung1) was used to build a prognostic radiomic signature. The Lung3 dataset used to investigate the association of radiomic imaging features with gene-expression profiles consisting of 89 NSCLC CT scans with outcome data can be found here: <a href=\"https:\/\/wiki.cancerimagingarchive.net\/pages\/viewpage.action?pageId=16056856\">NSCLC-Radiomics-Genomics<\/a>.<\/p><p>Other data sets in the Cancer Imaging Archive that were used in the same <a href=\"http:\/\/www.nature.com\/ncomms\/2014\/140603\/ncomms5006\/full\/ncomms5006.html\" class=\"external-link\" rel=\"nofollow\">study published in Nature Communications<\/a>: <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/iBglAw\" rel=\"nofollow\">Head-Neck-Radiomics-HN1<\/a>, <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/bgAlAw\" rel=\"nofollow\">NSCLC-Radiomics-Interobserver1<\/a>, <a href=\"https:\/\/wiki.cancerimagingarchive.net\/pages\/viewpage.action?pageId=46334165\">RIDER Lung CT Segmentation Labels from: Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach (RIDER-LungCT-Seg)<\/a>.<\/p><p><br\/><\/p><p><span style=\"letter-spacing: 0.0px;\"><span class=\"confluence-embedded-file-wrapper\"><img class=\"confluence-embedded-image confluence-external-resource\" draggable=\"false\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/52756590\/NSCLC%20RADIOMICS%20GRAPHIC.jpg?version=1&amp;modificationDate=1552678977224&amp;api=v2\" data-image-src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/52756590\/NSCLC%20RADIOMICS%20GRAPHIC.jpg?version=1&amp;modificationDate=1552678977224&amp;api=v2\"><\/span><\/span><\/p><p><br\/><\/p><p><span style=\"letter-spacing: 0.0px;\">For scientific or other inquiries about this dataset,<\/span><span style=\"letter-spacing: 0.0px;\">\u00a0<\/span><span style=\"letter-spacing: 0.0px;\">please\u00a0<a class=\"external-link\" rel=\"nofollow\" style=\"text-decoration: underline;text-align: left;\" href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact the TCIA Helpdesk<\/a><span style=\"color: rgb(33,37,41);\">.<\/span><\/span><\/p><p><strong>Acknowledgements<\/strong><\/p><p>We would like to acknowledge the individuals and institutions that have provided data for this collection:<\/p><ul><li>Leonard Wee, MAASTRO (Dept of Radiotherapy), Maastricht University Medical Centre+, Maastricht, Limburg, The Netherlands.<\/li><li>Dirk de\u00a0Ruysscher, MAASTRO (Dept of Radiotherapy), Maastricht University Medical Centre+, Maastricht, Limburg, The Netherlands.<\/li><li>Andre Dekker, MAASTRO (Dept of Radiotherapy), Maastricht University Medical Centre+, Maastricht, Limburg, The Netherlands.<\/li><li>Hugo\u00a0Aerts, Computational Imaging and Bioinformatic Laboratory, Dana-Farber Cancer Institute &amp; Harvard Medical School, Boston, Massachusetts, USA.<\/li><li>Harmonization of the components of this dataset, including into\u00a0standard DICOM representation, was supported in part by the NCI\u00a0Imaging Data Commons consortium. NCI Imaging Data Commons consortium\u00a0is supported by the contract number 19X037Q from Leidos Biomedical\u00a0Research under Task Order HHSN26100071 from NCI.<\/li><\/ul><\/div><div class=\"columnMacro\"><p><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" width=\"300\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/Public\/NSCLC-Radiomics\/image2014-7-1%2013:47:11.png?api=v2\"><\/span><\/p><\/div><\/div><\/div><\/div><p><br\/><\/p><div class=\"wiki-content\"><div class=\"wiki-content\" style=\"margin-left: 0.0px;\"><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#160568545148d87601f04ba7b75539486dbeef49\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#16056854b1ed014fd1444cb28987f6449df1ad68\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#160568542410a86c08104dd29dadd1752b9bac29\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#16056854e537f282f3cb487391da7de39dcd518f\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"160568545148d87601f04ba7b75539486dbeef49\" active=\"true\" name=\"Data Access\" ><h3 id=\"NSCLCRadiomics-DataAccess\">Data Access<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 57.9372%;\"><colgroup><col style=\"width: 42.622%;\"\/><col style=\"width: 27.0398%;\"\/><col style=\"width: 30.3138%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Images, Segmentations, and Radiation Therapy Structures (DICOM, 33GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/16056854\/NSCLC%20Radiomics%20Version%204%20Oct%202020%20NBIA-manifest.tcia?version=1&amp;modificationDate=1603198863613&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=NSCLC-Radiomics\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p>(Download requires\u00a0the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p class=\"auto-cursor-target\">\n<a href=\"https:\/\/creativecommons.org\/licenses\/by-nc\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY-NC 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\"><span>Lung1 clinical<\/span> (CSV)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/16056854\/NSCLC%20Radiomics%20Lung1.clinical-version3-Oct%202019.csv?version=1&amp;modificationDate=1572013183040&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p class=\"auto-cursor-target\">\n<a href=\"https:\/\/creativecommons.org\/licenses\/by-nc\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY-NC 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><p>\n<h3 id=\"NSCLCRadiomics-AdditionalResourcesforthisDataset\">Additional Resources for this Dataset<\/h3>\n<p>The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.<\/p><\/p><ul><li class=\"auto-cursor-target\"><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=nsclc_radiomics\" class=\"external-link\" rel=\"nofollow\">Imaging Data Commons (IDC)<\/a> (Imaging Data)<\/li><\/ul><h3 style=\"text-align: left;\" id=\"NSCLCRadiomics-ThirdPartyAnalysesofthisDataset\">Third Party Analyses of this Dataset<\/h3><p style=\"text-align: left;\"><span>TCIA encourages the community to\u00a0<\/span><a rel=\"nofollow\" style=\"text-decoration: none;\" class=\"external-link\" href=\"http:\/\/www.cancerimagingarchive.net\/analysis-results\/\">publish your analyses of our datasets<\/a><span>. Below is a list of such third party analyses published using this Collection:<\/span><\/p><ul><li style=\"text-align: left;\"><a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/nwIWB\" rel=\"nofollow\">Thoracic Volume and Pleural Effusion Segmentations in Diseased Lungs for Benchmarking Chest CT Processing Pipelines<\/a><\/li><\/ul><\/div><div class=\"tabs-pane \" id=\"16056854b1ed014fd1444cb28987f6449df1ad68\" name=\"Detailed Description\" ><h3 id=\"NSCLCRadiomics-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p>Collection Statistics<\/p><\/div><\/th><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p><br\/><\/p><\/div><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td class=\"confluenceTd\"><p>CT, RTSTRUCT, SEG<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Participants<\/p><\/td><td class=\"confluenceTd\"><p>422<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td class=\"confluenceTd\"><p>422<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td class=\"confluenceTd\"><p>1265<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\"><p>52073<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Image Size (GB)<\/td><td colspan=\"1\" class=\"confluenceTd\">33<\/td><\/tr><\/tbody><\/table><\/div><h4 id=\"NSCLCRadiomics-RadiationOncologistTumorSegmentations\">Radiation Oncologist Tumor Segmentations<\/h4><p><span style=\"color: rgb(33,33,33);\"><br\/>The DICOM Radiotherapy Structure Sets (RTSTRUCT) and DICOM Segmentation (SEG) files in this data contain a manual delineation by a radiation oncologist of the 3D volume of the primary gross tumor volume (&quot;GTV-1&quot;) and selected anatomical structures (i.e., lung, heart and esophagus). Of note, DICOM SEG objects contain a subset of annotations available in RTSTRUCT.<br\/><br\/>For viewing the annotations the authors recommend <a href=\"https:\/\/www.slicer.org\/\" class=\"external-link\" rel=\"nofollow\">3D Slicer<\/a> that can be used to view both RTSTRUCT and SEG annotations (make sure you install the SlicerRT and QuantitativeReporting extensions first!). <\/span><span style=\"color: rgb(33,33,33);\">Visualization of the DICOM annotations is also supported by the<a href=\"https:\/\/github.com\/OHIF\/Viewers\" class=\"external-link\" rel=\"nofollow\"> OHIF Viewer<\/a>. <\/span><\/p><p><span style=\"color: rgb(33,33,33);\">Other tools include:<\/span><\/p><ul><li><span style=\"color: rgb(33,33,33);\"><a href=\"http:\/\/www.dicompyler.com\/\" class=\"external-link\" rel=\"nofollow\">Dicompyler<\/a>\u00a0is an open source, cross-platform DICOM RT viewer.<\/span><\/li><li><span style=\"color: rgb(33,33,33);\">The\u00a0<a href=\"https:\/\/github.com\/dicom\/rtkit\" class=\"external-link\" rel=\"nofollow\">Radiotherapy DICOM toolkit<\/a>, which may also be useful for working with this data.\u00a0<\/span><\/li><li><span style=\"color: rgb(33,33,33);\"><a href=\"https:\/\/github.com\/QIICR\/dcmqi\" class=\"external-link\" rel=\"nofollow\">dcmqi<\/a> and <a href=\"https:\/\/plastimatch.org\/\" class=\"external-link\" rel=\"nofollow\">Plastimatch<\/a>\u00a0libraries can be used to support conversion of the DICOM SEG and RTSTRUCT representations, respectively, into the popular research formats, such as NIfTI or NRRD.<br\/><br\/><\/span><\/li><\/ul><h4 id=\"NSCLCRadiomics-ClinicalData\">Clinical Data<\/h4><p>Corresponding clinical data can be found here:\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/16056854\/NSCLC%20Radiomics%20Lung1.clinical-version3-Oct%202019.csv?version=1&amp;modificationDate=1572013183040&amp;api=v2\" data-linked-resource-id=\"61080977\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"NSCLC Radiomics Lung1.clinical-version3-Oct 2019.csv\" data-linked-resource-content-type=\"text\/csv\" data-linked-resource-container-id=\"16056854\" data-linked-resource-container-version=\"94\">Lung1.clinical.csv<\/a>.<\/p><p>Please note that survival time is measured in days from start of treatment. DICOM patients names are identical in TCIA and clinical data file.<\/p><p>The deadstatus.event follows the standard epidemiological \/ biomedical definition for time to event survival modelling whereby :<\/p><p>1 == \u201cdeath has occurred at the time interval value stated on the next column\u201d, hence<\/p><p>0 == \u201cdeath has NOT occurred up until the time interval value stated in the next column, and is therefore right-censored\u201d.<\/p><h4 id=\"NSCLCRadiomics-Note:\">Note:<\/h4><p><span style=\"color: rgb(23,43,77);\">Some CT (\u00a0<\/span>LUNG1-014 ,<span>\u00a0<\/span><span style=\"color: rgb(23,43,77);\">\u00a0<\/span>LUNG1-021 ,<span>\u00a0<\/span><span style=\"color: rgb(23,43,77);\">\u00a0<\/span>LUNG1-085)\u00a0\u00a0<span style=\"color: rgb(23,43,77);\">are missing some slices from the complete volume, unfortunately not detected until recently. The skipped CT slice did not cut through the Gross Tumour Volume which was the principal focus of this Collection. We understand the user may have a different principal focus for re-using this collection, but perhaps some other workaround like interpolation may be timely and feasible for those affected volumes.<span>\u00a0<\/span><\/span><\/p><\/div><div class=\"tabs-pane \" id=\"160568542410a86c08104dd29dadd1752b9bac29\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"NSCLCRadiomics-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy\u00a0<\/h3><p>\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(102,102,102);\"><span style=\"color: rgb(0,0,0);\"><span style=\"text-decoration: none;\">Aerts, H. J. W. L., Wee, L., Rios Velazquez, E., Leijenaar, R. T. H., Parmar, C., Grossmann, P., <span style=\"color: rgb(102,102,102);\"><span style=\"color: rgb(52,73,94);text-decoration: none;\">Carvalho, S., Bussink, J., Monshouwer, R., Haibe-Kains, B., Rietveld, D., Hoebers, F., Rietbergen, M. M., Leemans, C. R., Dekker, A., Quackenbush, J., Gillies, R. J., <\/span><\/span>Lambin, P. (2014). <\/span><strong>Data From NSCLC-Radiomics<\/strong><\/span><span style=\"color: rgb(52,73,94);text-decoration: none;\"><span style=\"color: rgb(0,0,0);\"><strong> (version 4) <\/strong>[Data set]. The Cancer Imaging Archive.<\/span> <a style=\"text-decoration: underline;\" title=\"https:\/\/doi.org\/10.7937\/K9\/TCIA.2015.PF0M9REI\" href=\"https:\/\/doi.org\/10.7937\/K9\/TCIA.2015.PF0M9REI\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/K9\/TCIA.2015.PF0M9REI<\/a>\u00a0<\/span><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(0,0,0);\"><span style=\"color: rgb(102,102,102);\"><span style=\"color: rgb(0,0,0);\">Aerts, H. J. W. L., Velazquez, E. R., Leijenaar, R. T. H., Parmar, C., Grossmann, P., Carvalho, S., Bussink, J., Monshouwer, R., Haibe-Kains, B., Rietveld, D., Hoebers, F., Rietbergen, M. M., Leemans, C. R., Dekker, A., Quackenbush, J., Gillies, R. J., Lambin, P. (2014, June 3). <strong>Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach.<\/strong> Nature Communications. Nature Publishing Group.<\/span> <a href=\"https:\/\/doi.org\/10.1038\/ncomms5006\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1038\/ncomms5006<\/a><\/span>\u00a0<\/span>\u00a0<a class=\"external-link\" href=\"http:\/\/www.nature.com\/ncomms\/2014\/140603\/ncomms5006\/full\/ncomms5006.html\" rel=\"nofollow\">(link)<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F.\u00a0<strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/a><\/p><\/div><\/div><p><span>Questions may be directed to\u00a0<a href=\"mailto:help@cancerimagingarchive.net\" class=\"external-link\" rel=\"nofollow\">help@cancerimagingarchive.net<\/a>.\u00a0<\/span><\/p><h3 id=\"NSCLCRadiomics-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\">a list of publications<\/a> which leverage our data. <\/span>If you have a publication you'd like to add, please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\"> contact the TCIA Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"16056854e537f282f3cb487391da7de39dcd518f\" name=\"Versions\" ><h3 id=\"NSCLCRadiomics-Version4(Current):Updated2020\/10\/22\">Version 4 (Current): Updated 2020\/10\/22<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 29.4461%;\"><colgroup><col style=\"width: 29.2528%;\"\/><col style=\"width: 70.7292%;\"\/><\/colgroup><tbody><tr><th colspan=\"1\" class=\"confluenceTh\">Data Type<\/th><th colspan=\"1\" class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images (DICOM, 33 GB)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/16056854\/NSCLC%20Radiomics%20Version%204%20Oct%202020%20NBIA-manifest.tcia?version=1&amp;modificationDate=1603198863613&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=NSCLC-Radiomics\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p><span class=\"confluence-link\">(Download requires\u00a0the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/span><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\"><span>Lung1 clinical<\/span> (CSV)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/16056854\/NSCLC%20Radiomics%20Lung1.clinical-version3-Oct%202019.csv?version=1&amp;modificationDate=1572013183040&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><ul><li>RTSTRUCT and SEG study instance UID changed to match study instance uid with associated CT image.<\/li><li>Added missing structures in SEG files to match associated RTSTRUCTs.<\/li><li>Patient Id copied to Patient Name in CT images (for consistency).<\/li><li>Added 1 missing image for LUNG1-246.<\/li><\/ul><h3 id=\"NSCLCRadiomics-Version3:Updated2019\/10\/23\">Version 3: Updated 2019\/10\/23<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th colspan=\"1\" class=\"confluenceTh\">Data Type<\/th><th colspan=\"1\" class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images (DICOM, 29GB)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/16056854\/NSCLC-Radiomics-V3-Oct2019.NBIA-manifest.tcia?version=1&amp;modificationDate=1571863634068&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p><span class=\"confluence-link\">(Download requires\u00a0the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/span><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\"><span>Lung1 clinical<\/span> (CSV)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/16056854\/NSCLC%20Radiomics%20Lung1.clinical-version3-Oct%202019.csv?version=1&amp;modificationDate=1572013183040&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><ul><li class=\"p1\"><span class=\"s1\">Re-checked and updated the RTSTRUCT files to amend issues in the previous submission due to missing RTSTRUCTS or regions of interest that were not vertically aligned with the patient image. <\/span><\/li><li class=\"p1\"><span class=\"s1\">In 4 cases (LUNG1-083,LUNG1-095,LUNG1-137,LUNG1-246) re-submitted the correct CT images. <\/span><\/li><li class=\"p1\"><span class=\"s1\">The regions of interest now include the primary lung tumor labelled as \u201cGTV-1\u201d, as well as organs at risk. <\/span><\/li><li class=\"p1\"><span class=\"s1\">For one case (LUNG1-128) the subject does not have GTV-1 because it was actually a post-operative case; we retained the CT scan here for completeness.<\/span><\/li><li class=\"p1\"><span class=\"s1\">Added DICOM SEGMENTATION objects to the collection, which makes it easier to search and retrieve the GTV-1 binary mask for re-use in quantitative imaging research.<\/span><\/li><li class=\"p1\"><span class=\"s1\">Clinical data updated as\u00a0<span style=\"color: rgb(33,33,33);\">follow-up time has been extended.<\/span><\/span><\/li><\/ul><h3 id=\"NSCLCRadiomics-Version2:Updated2016\/05\/31(version2removedasRTSTRUCTsorregionsofinterestwerenotverticallyalignedwithpatientimages.Seeversion3forupdatedfiles).\">Version 2: Updated 2016\/05\/31 (version 2 r<span style=\"color: rgb(33,33,33);\">emoved as RTSTRUCTs or regions of interest were not vertically aligned with patient images. See version 3 for updated files<\/span>).<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th colspan=\"1\" class=\"confluenceTh\">Data Type<\/th><th colspan=\"1\" class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images (DICOM, 25GB)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\u00a0not available, see version 3<\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\"><span>Lung1 clinical<\/span> (CSV)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/16056854\/Lung1.clinical_%20version%201%20and%20version2.csv?version=1&amp;modificationDate=1584901749543&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>\u00a0Added 318 RTSTRUCT files for existing subject imaging data<\/p><h3 id=\"NSCLCRadiomics-Version1:Updated2014\/07\/02\">Version 1: Updated 2014\/07\/02<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th colspan=\"1\" class=\"confluenceTh\">Data Type<\/th><th colspan=\"1\" class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images (DICOM, 25GB)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/16056854\/TCIA_NSCLC-Radiomics_06-22-2015.tcia?version=1&amp;modificationDate=1534787429158&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p><span class=\"confluence-link\"><span>(Download requires\u00a0the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/span><\/span><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\"><span>Lung1 clinical<\/span> (CSV)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/16056854\/Lung1.clinical_%20version%201%20and%20version2.csv?version=1&amp;modificationDate=1584901749543&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><\/div><\/div><p><br\/><\/p>","versions":false,"additional_resources":"The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.\n \n<ul><li><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=nsclc_radiomics\">Imaging Data Commons (IDC)<\/a> (Imaging Data)<\/li><\/ul>","cancer_locations":["Lung"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"TCIA encourages the community to\u00a0<a href=\"http:\/\/www.cancerimagingarchive.net\/analysis-results\/\">publish your analyses of our datasets<\/a>. Below is a list of such third party analyses published using this Collection:\n<ul><li><a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/nwIWB\">Thoracic Volume and Pleural Effusion Segmentations in Diseased Lungs for Benchmarking Chest CT Processing Pipelines<\/a><\/li><\/ul>","collection_status":"Ongoing","publications_using":"TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a> which leverage our data. If you have a publication you'd like to add, please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact the TCIA Helpdesk<\/a>.","species":["Human"],"collection_title":"NSCLC-Radiomics","detailed_description":"<h4>Radiation Oncologist Tumor Segmentations<\/h4>\n<br\/>The DICOM Radiotherapy Structure Sets (RTSTRUCT) and DICOM Segmentation (SEG) files in this data contain a manual delineation by a radiation oncologist of the 3D volume of the primary gross tumor volume (\"GTV-1\") and selected anatomical structures (i.e., lung, heart and esophagus). Of note, DICOM SEG objects contain a subset of annotations available in RTSTRUCT.<br\/><br\/>For viewing the annotations the authors recommend <a href=\"https:\/\/www.slicer.org\/\">3D Slicer<\/a> that can be used to view both RTSTRUCT and SEG annotations (make sure you install the SlicerRT and QuantitativeReporting extensions first!). Visualization of the DICOM annotations is also supported by the<a href=\"https:\/\/github.com\/OHIF\/Viewers\"> OHIF Viewer<\/a>. \nOther tools include:\n<ul><li><a href=\"http:\/\/www.dicompyler.com\/\">Dicompyler<\/a>\u00a0is an open source, cross-platform DICOM RT viewer.<\/li><li>The\u00a0<a href=\"https:\/\/github.com\/dicom\/rtkit\">Radiotherapy DICOM toolkit<\/a>, which may also be useful for working with this data.\u00a0<\/li><li><a href=\"https:\/\/github.com\/QIICR\/dcmqi\">dcmqi<\/a> and <a href=\"https:\/\/plastimatch.org\/\">Plastimatch<\/a>\u00a0libraries can be used to support conversion of the DICOM SEG and RTSTRUCT representations, respectively, into the popular research formats, such as NIfTI or NRRD.<br\/><br\/><\/li><\/ul>\n<h4>Clinical Data<\/h4>\nCorresponding clinical data can be found here:\u00a0<a data-linked-resource-container-id=\"16056854\" data-linked-resource-container-version=\"94\" data-linked-resource-content-type=\"text\/csv\" data-linked-resource-default-alias=\"NSCLC Radiomics Lung1.clinical-version3-Oct 2019.csv\" data-linked-resource-id=\"61080977\" data-linked-resource-type=\"attachment\" data-linked-resource-version=\"1\" download=\"\" href=\"\/wp-content\/uploads\/NSCLC-Radiomics-Lung1.clinical-version3-Oct-2019.csv\" target=\"_blank\">Lung1.clinical.csv<\/a>.\nPlease note that survival time is measured in days from start of treatment. DICOM patients names are identical in TCIA and clinical data file.\nThe deadstatus.event follows the standard epidemiological \/ biomedical definition for time to event survival modelling whereby :\n1 == \u201cdeath has occurred at the time interval value stated on the next column\u201d, hence\n0 == \u201cdeath has NOT occurred up until the time interval value stated in the next column, and is therefore right-censored\u201d.\n<h4>Note:<\/h4>\nSome CT (\u00a0LUNG1-014 ,\u00a0\u00a0LUNG1-021 ,\u00a0\u00a0LUNG1-085)\u00a0\u00a0are missing some slices from the complete volume, unfortunately not detected until recently. The skipped CT slice did not cut through the Gross Tumour Volume which was the principal focus of this Collection. We understand the user may have a different principal focus for re-using this collection, but perhaps some other workaround like interpolation may be timely and feasible for those affected volumes.","related_analysis_results":false,"subjects":"422","collection_short_title":"NSCLC-Radiomics","data_types":["CT","RTSTRUCT","SEG"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":["Clinical","Image Analyses"],"collection_featured_image":{"ID":"8033","post_author":"6","post_date":"2023-09-13 03:52:55","post_date_gmt":"2023-09-13 03:52:55","post_content":"","post_title":"nsclc_for_wiki","post_excerpt":"","post_status":"inherit","comment_status":"open","ping_status":"closed","post_password":"","post_name":"nsclc_for_wiki","to_ping":"","pinged":"","post_modified":"2023-09-13 12:01:02","post_modified_gmt":"2023-09-13 12:01:02","post_content_filtered":"","post_parent":"5639","guid":"https:\/\/cm.vastapps.dev\/wp-content\/uploads\/nsclc_for_wiki.tif","menu_order":"0","post_type":"attachment","post_mime_type":"image\/tiff","comment_count":"0","pod_item_id":"8033"},"collection_summary":"This collection contains images from 422 non-small cell lung cancer (NSCLC) patients. For these patients pretreatment CT scans,\u00a0manual delineation by a radiation oncologist of the 3D volume of the gross tumor volume and clinical outcome data are available. This dataset refers to the Lung1 dataset of the <a href=\"http:\/\/www.nature.com\/ncomms\/2014\/140603\/ncomms5006\/full\/ncomms5006.html\">study published in Nature Communications<\/a>.<p><br\/>In short, this publication applies a radiomic approach to computed tomography data of 1,019 patients with lung or head-and-neck cancer. Radiomics refers to the comprehensive quantification of tumour phenotypes by applying a large number of quantitative image features. In present analysis 440 features quantifying tumour image intensity, shape and texture, were extracted.\u00a0 We found that a large number of radiomic features have prognostic power in independent data sets, many of which were not identified as significant before. Radiogenomics analysis revealed that a prognostic radiomic signature, capturing intra-tumour heterogeneity, was associated with underlying gene-expression patterns. These data suggest that radiomics identifies a general prognostic phenotype existing in both lung and head-and-neck cancer. This may have a clinical impact as imaging is routinely used in clinical practice, providing an unprecedented opportunity to improve decision-support in cancer treatment at low cost.\u00a0The DICOM Radiotherapy Structure Sets (RTSTRUCT) and DICOM Segmentation (SEG) files in this data contain a manual delineation by a radiation oncologist of the 3D volume of the primary gross tumor volume (\"GTV-1\") and selected anatomical structures (i.e., lung, heart and esophagus). Of note, DICOM SEG objects contain a subset of annotations available in RTSTRUCT.<br\/><br\/>The dataset described here (Lung1) was used to build a prognostic radiomic signature. The Lung3 dataset used to investigate the association of radiomic imaging features with gene-expression profiles consisting of 89 NSCLC CT scans with outcome data can be found here: <a href=\"\/display\/Public\/NSCLC-Radiomics-Genomics\">NSCLC-Radiomics-Genomics<\/a>.<\/p><p>Other data sets in the Cancer Imaging Archive that were used in the same <a href=\"http:\/\/www.nature.com\/ncomms\/2014\/140603\/ncomms5006\/full\/ncomms5006.html\">study published in Nature Communications<\/a>: <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/iBglAw\">Head-Neck-Radiomics-HN1<\/a>, <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/bgAlAw\">NSCLC-Radiomics-Interobserver1<\/a>, <a href=\"\/pages\/viewpage.action?pageId=46334165\">RIDER Lung CT Segmentation Labels from: Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach (RIDER-LungCT-Seg)<\/a>.<\/p><p><\/p><p>For scientific or other inquiries about this dataset,\u00a0please\u00a0<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact the TCIA Helpdesk<\/a>.<\/p><p><strong>Acknowledgements<\/strong><\/p><p>We would like to acknowledge the individuals and institutions that have provided data for this collection:<\/p><ul><li>Leonard Wee, MAASTRO (Dept of Radiotherapy), Maastricht University Medical Centre+, Maastricht, Limburg, The Netherlands.<\/li><li>Dirk de\u00a0Ruysscher, MAASTRO (Dept of Radiotherapy), Maastricht University Medical Centre+, Maastricht, Limburg, The Netherlands.<\/li><li>Andre Dekker, MAASTRO (Dept of Radiotherapy), Maastricht University Medical Centre+, Maastricht, Limburg, The Netherlands.<\/li><li>Hugo\u00a0Aerts, Computational Imaging and Bioinformatic Laboratory, Dana-Farber Cancer Institute &amp; Harvard Medical School, Boston, Massachusetts, USA.<\/li><li>Harmonization of the components of this dataset, including into\u00a0standard DICOM representation, was supported in part by the NCI\u00a0Imaging Data Commons consortium. NCI Imaging Data Commons consortium\u00a0is supported by the contract number 19X037Q from Leidos Biomedical\u00a0Research under Task Order HHSN26100071 from NCI.<\/li><\/ul><div><p><div class=\"cm-content-image\"><a href=\"\/wp-content\/uploads\/image2014-7-1-134711.png\" rel=\"prettyPhoto noopener\" target=\"_blank\"><img src=\"\/wp-content\/uploads\/image2014-7-1-134711.png\"\/><\/a><\/div><\/p><\/div>\n<br\/>","collection_acknowledgements":"","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5639"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media\/8033"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5639"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5639"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}