{"id":5635,"date":"2023-09-04T03:14:14","date_gmt":"2023-09-04T03:14:14","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/naf-prostate\/"},"modified":"2023-09-13T12:00:51","modified_gmt":"2023-09-13T12:00:51","slug":"naf-prostate","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/naf-prostate\/","title":{"rendered":"NAF-PROSTATE"},"featured_media":0,"template":"","citation-tax":[],"cancer_types":["Prostate Cancer"],"citations":[4542,4543,2925],"collection_doi":"10.7937\/K9\/TCIA.2015.ISOQTHKO","collection_download_info":"Summary\nImaging was performed on a Phillips Gemini TF PET\/CT scanner based on 4x4x22mm LYSO (lutetium yttrium orthosilicate) crystal detection elements covering 18cm axial field of view (FOV) and 57cm imaging transaxial FOV. The time of flight resolution is 585ps. The scanner achieves a spatial resolution of 4.8mm at the center of the FOV. Data were reconstructed using the RAMLA iterative OSEM algorithm using 3 iterations and 33 subsets. The scanner uses CT based attenuation correction, along with randoms, normalization, dead time, and a model based scatter correction. The CT component of the scanner is a 16 slice helical CT. The CT images were generated using a low X-ray dose of 120KV, 60mAs setting.\nThe prescribed injected dose was 3mCi IV. Some of the patients had 2 baseline studies within 14 days of each other (with no intervening interventions). Many have follow-up PET\/CT imaging performed following therapy (varied) at 6 +\/-2months and 12 +\/- 2 months. For scientific or other inquiries relating to this data set, please\u00a0<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact the TCIA Helpdesk<\/a>.","collection_downloads":[5145,5146],"full_export":"<div class=\"contentLayout2\">\n<div class=\"columnLayout two-right-sidebar\" data-layout=\"two-right-sidebar\">\n<div class=\"cell normal\" data-type=\"normal\">\n<div class=\"innerCell\">\n<p><span style=\"font-size: 20.0px;font-weight: bold;line-height: 1.5;\">Summary<\/span><\/p>This is a collection of F-18 NaF positron emission tomography\/computed tomography (PET\/CT) images in patients with prostate cancer, with suspected or known bone involvement.<p>Imaging was performed on a Phillips Gemini TF PET\/CT scanner based on 4x4x22mm LYSO (lutetium yttrium orthosilicate) crystal detection elements covering 18cm axial field of view (FOV) and 57cm imaging transaxial FOV. The time of flight resolution is 585ps. The scanner achieves a spatial resolution of 4.8mm at the center of the FOV. Data were reconstructed using the RAMLA iterative OSEM algorithm using 3 iterations and 33 subsets. The scanner uses CT based attenuation correction, along with randoms, normalization, dead time, and a model based scatter correction. The CT component of the scanner is a 16 slice helical CT. The CT images were generated using a low X-ray dose of 120KV, 60mAs setting.<\/p><p>The prescribed injected dose was 3mCi IV. Some of the patients had 2 baseline studies within 14 days of each other (with no intervening interventions). Many have follow-up PET\/CT imaging performed following therapy (varied) at 6 +\/-2months and 12 +\/- 2 months. For scientific or other inquiries relating to this data set, please\u00a0<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" style=\"text-decoration: underline;text-align: left;\" rel=\"nofollow\" class=\"external-link\">contact the TCIA Helpdesk<\/a><span style=\"color: rgb(33,37,41);\">.<\/span><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#353910547349c15c7ed4a2b9ae39f6edeec94ac\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#353910517a17dcd5fbd44b3853badce5d9345a5\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#35391058dbf3e82914b4aa78e120ba1a95f99fb\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#353910591f5956f30a54df7a8ea57ac4aad280a\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"353910547349c15c7ed4a2b9ae39f6edeec94ac\" active=\"true\" name=\"Data Access\" ><h3 id=\"NaFPROSTATE-DataAccess\">Data Access<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 58.7128%;\"><colgroup><col style=\"width: 31.7334%;\"\/><col style=\"width: 38.114%;\"\/><col style=\"width: 30.0131%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Images (12.9GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539105\/TCIA_NaF_PROSTATE_06-22-2015.tcia?version=1&amp;modificationDate=1534787406608&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/www.cancerimagingarchive.net\/nbia-search\/?CollectionCriteria=NaF%20PROSTATE\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span>\u00a0<a href=\"https:\/\/www.cancerimagingarchive.net\/nbia-search\/?CollectionCriteria=NaF PROSTATE\" class=\"external-link\" rel=\"nofollow\">\u00a0<\/a><\/p><\/div><p>(Download requires\u00a0the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">DICOM Metadata Digest (CSV)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539105\/NaF%20Prostate_MetaData.csv?version=1&amp;modificationDate=1495728368893&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><p>\n<h3 id=\"NaFPROSTATE-AdditionalResourcesforthisDataset\">Additional Resources for this Dataset<\/h3>\n<p>The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.<\/p><\/p><ul><li class=\"auto-cursor-target\"><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=naf_prostate\" class=\"external-link\" rel=\"nofollow\">Imaging Data Commons (IDC)<\/a> (Imaging Data)<\/li><\/ul><\/div><div class=\"tabs-pane \" id=\"353910517a17dcd5fbd44b3853badce5d9345a5\" name=\"Detailed Description\" ><h3 id=\"NaFPROSTATE-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><tbody><tr><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p>Collection Statistics<\/p><\/div><\/th><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p>Updated 4\/23\/2013<\/p><\/div><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>PET\/CT<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Participants<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>9<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>44<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>214<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>64,535<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Image Size (GB)<\/td><td style=\"text-align: center;\" colspan=\"1\" class=\"confluenceTd\">12.9<\/td><\/tr><\/tbody><\/table><\/div><\/div><div class=\"tabs-pane \" id=\"35391058dbf3e82914b4aa78e120ba1a95f99fb\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"NaFPROSTATE-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy\u00a0<\/h3><p class=\"auto-cursor-target\">\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Kurdziel, Karen A, Apolo, Andrea B., Lindenberg, Liza, Mena, Esther, McKinney, Yolanda Y., Adler, Stephen S., \u2026 Choyke, Peter L. (2015).<strong> Data From NaF PROSTATE [Dataset]<\/strong>. The Cancer Imaging Archive. <a href=\"https:\/\/doi.org\/10.7937\/K9\/TCIA.2015.ISOQTHKO\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/K9\/TCIA.2015.ISOQTHKO<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(102,102,102);\"> <span style=\"color: rgb(0,0,0);\">Kurdziel, K. A., Shih, J. H., Apolo, A. B., Lindenberg, L., Mena, E., McKinney, Y. Y., \u2026 Choyke, P. L. (2012, June 22). The Kinetics and Reproducibility of 18F-Sodium Fluoride for Oncology Using Current PET Camera Technology. Journal of Nuclear Medicine. Society of Nuclear Medicine.<\/span> <a href=\"https:\/\/doi.org\/10.2967\/jnumed.111.100883\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.2967\/jnumed.111.100883<\/a> <\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(102,102,102);\">Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., &amp; Prior, F. (2013). <strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>. In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045\u20131057). Springer Science and Business Media LLC. <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/a><\/span><\/p><\/div><\/div><h3 id=\"NaFPROSTATE-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains<a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\">\u00a0a list of publications<\/a> that leverage our data. <\/span>\u00a0<span>If you have a <\/span><span>publication <\/span><span>you'd like to add, please<\/span><a class=\"external-link\" href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" rel=\"nofollow\"> contact the TCIA Helpdesk<\/a><span>. <span style=\"color: rgb(33,37,41);\">Some publications that have used this dataset as a resource include:<\/span><\/span><\/p><ol><li><span>Brassey, C. A., O'Mahoney, T. G., Chamberlain, A. T., &amp; Sellers, W. I. (2018). A volumetric technique for fossil body mass estimation applied to Australopithecus afarensis. Journal of human evolution, 115, 47-64. doi: <a href=\"https:\/\/doi.org\/10.1016\/j.jhevol.2017.07.014\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1016\/j.jhevol.2017.07.014<\/a>\u00a0<br\/><\/span><\/li><li><span>Chen, J., Li, Y., Du, Y., &amp; Frey, E. C. (2020). Generating anthropomorphic phantoms using fully unsupervised deformable image registration with convolutional neural networks. Med Phys, 47(12), 6366-6380. doi: <a href=\"https:\/\/doi.org\/10.1002\/mp.14545\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1002\/mp.14545<\/a>\u00a0<\/span><span><br\/><\/span><\/li><li><span>Trebeschi, S., Bodalal, Z., van Dijk, N., Boellaard, T. N., Apfaltrer, P., Tareco Bucho, T. M., . . . Beets-Tan, R. G. H. (2021). Development of a Prognostic AI-Monitor for Metastatic Urothelial Cancer Patients Receiving Immunotherapy. Front Oncol, 11, 637804. doi: <a href=\"https:\/\/doi.org\/10.3389\/fonc.2021.637804\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.3389\/fonc.2021.637804<\/a>\u00a0<br\/><\/span><\/li><\/ol><\/div><div class=\"tabs-pane \" id=\"353910591f5956f30a54df7a8ea57ac4aad280a\" name=\"Versions\" ><h3 id=\"NaFPROSTATE-Version1(Current):Updated2013\/4\/23\">Version 1 (Current): Updated 2013\/4\/23<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup> <col\/> <col\/> <\/colgroup><tbody><tr><th colspan=\"1\" class=\"confluenceTh\">Data Type<\/th><th colspan=\"1\" class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images (48.8GB)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539105\/TCIA_NaF_PROSTATE_06-22-2015.tcia?version=1&amp;modificationDate=1534787406608&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/www.cancerimagingarchive.net\/nbia-search\/?CollectionCriteria=NaF%20PROSTATE\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span>\u00a0<a href=\"https:\/\/www.cancerimagingarchive.net\/nbia-search\/?CollectionCriteria=NaF PROSTATE\" class=\"external-link\" rel=\"nofollow\">\u00a0<\/a><\/p><p>(Download requires\u00a0the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/p><p><span class=\"confluence-link\"><br\/><\/span><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">DICOM Metadata Digest (CSV)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539105\/NaF%20Prostate_MetaData.csv?version=1&amp;modificationDate=1495728368893&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><\/div>\n<\/div>\n<div class=\"cell aside\" data-type=\"aside\">\n<div class=\"innerCell\">\n<p><br\/><\/p><\/div>\n<\/div>\n<\/div>\n<\/div>","versions":false,"additional_resources":"The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.\n \n<ul><li><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=naf_prostate\">Imaging Data Commons (IDC)<\/a> (Imaging Data)<\/li><\/ul>","cancer_locations":["Prostate"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"","collection_status":"Complete","publications_using":"TCIA maintains<a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">\u00a0a list of publications<\/a> that leverage our data. \u00a0If you have a publication you'd like to add, please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact the TCIA Helpdesk<\/a>. Some publications that have used this dataset as a resource include:\n<ol><li>Brassey, C. A., O'Mahoney, T. G., Chamberlain, A. T., &amp; Sellers, W. I. (2018). A volumetric technique for fossil body mass estimation applied to Australopithecus afarensis. Journal of human evolution, 115, 47-64. doi: <a href=\"https:\/\/doi.org\/10.1016\/j.jhevol.2017.07.014\">https:\/\/doi.org\/10.1016\/j.jhevol.2017.07.014<\/a>\u00a0<br\/><\/li><li>Chen, J., Li, Y., Du, Y., &amp; Frey, E. C. (2020). Generating anthropomorphic phantoms using fully unsupervised deformable image registration with convolutional neural networks. Med Phys, 47(12), 6366-6380. doi: <a href=\"https:\/\/doi.org\/10.1002\/mp.14545\">https:\/\/doi.org\/10.1002\/mp.14545<\/a>\u00a0<br\/><\/li><li>Trebeschi, S., Bodalal, Z., van Dijk, N., Boellaard, T. N., Apfaltrer, P., Tareco Bucho, T. M., . . . Beets-Tan, R. G. H. (2021). Development of a Prognostic AI-Monitor for Metastatic Urothelial Cancer Patients Receiving Immunotherapy. Front Oncol, 11, 637804. doi: <a href=\"https:\/\/doi.org\/10.3389\/fonc.2021.637804\">https:\/\/doi.org\/10.3389\/fonc.2021.637804<\/a>\u00a0<br\/><\/li><\/ol>","species":["Human"],"collection_title":"NaF PROSTATE","detailed_description":"","related_analysis_results":false,"subjects":"9","collection_short_title":"NaF PROSTATE","data_types":["PT","CT"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":false,"collection_featured_image":false,"collection_summary":"","collection_acknowledgements":"","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5635"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5635"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5635"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}