{"id":5628,"date":"2023-09-04T03:13:44","date_gmt":"2023-09-04T03:13:44","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/mimm_sbilab\/"},"modified":"2023-09-13T12:00:31","modified_gmt":"2023-09-13T12:00:31","slug":"mimm_sbilab","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/mimm_sbilab\/","title":{"rendered":"MIMM_SBILAB"},"featured_media":0,"template":"","citation-tax":[],"cancer_types":["Multiple Myeloma"],"citations":[4531,4532,4533,2925],"collection_doi":"10.7937\/tcia.2019.pnn6aypl","collection_download_info":"Click the Versions tab for more info about data releases.","collection_downloads":[5124,5125],"full_export":"<div class=\"contentLayout2\">\n<div class=\"columnLayout two-right-sidebar\" data-layout=\"two-right-sidebar\">\n<div class=\"cell normal\" data-type=\"normal\">\n<div class=\"innerCell\">\n<h2 id=\"MiMM_SBILabDataset:MicroscopicImagesofMultipleMyeloma(MiMM_SBILab)-Summary\">Summary<\/h2><div class=\"wiki-content\"><span> Microscopic images were captured from bone marrow aspirate slides of patients diagnosed with multiple myeloma as per the standard guidelines. Slides were stained using Jenner- Giemsa stain. Images were captured at 1000x magnification using Nikon Eclipse-200 microscope equipped with a digital camera. Images were captured in raw BMP format with a size of 2560x1920 pixels. In all, this dataset consists of 85 images. All these 85 images were stain normalized using our in-house methodology before being used for segmentation. These stain normalized images have been provided as the annotated dataset with plasma cells marked in all image slides contained in a presentation for the ready reference of readers.<\/span><h4 class=\"auto-cursor-target\" id=\"MiMM_SBILabDataset:MicroscopicImagesofMultipleMyeloma(MiMM_SBILab)-AdditionalNotes\"><strong>Additional Notes<\/strong><\/h4><p>This collection has also been uploaded to the Harvard Blood Cancer Dataverse website. Please refer to <a href=\"https:\/\/dataverse.harvard.edu\/dataset.xhtml?persistentId=doi:10.7910\/DVN\/XCX7ST\" class=\"external-link\" rel=\"nofollow\">DOI 10.7910\/DVN\/XCX7ST<\/a> for more information.<\/p><h4 id=\"MiMM_SBILabDataset:MicroscopicImagesofMultipleMyeloma(MiMM_SBILab)-AdditionalPublicationsusingthisdataset:\"><strong>Additional Publications using this dataset:<\/strong><\/h4><ul><li>Ritu Gupta, Pramit Mallick, Rahul Duggal, Anubha Gupta, and Ojaswa Sharma, &quot;Stain Color Normalization and Segmentation of Plasma Cells in Microscopic Images as a Prelude to Development of Computer Assisted Automated Disease Diagnostic Tool in Multiple Myeloma,&quot; 16th International Myeloma Workshop (IMW), India, March 2017 <a href=\"https:\/\/doi.org\/10.1016\/j.clml.2017.03.178\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1016\/j.clml.2017.03.178<\/a><\/li><\/ul><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#52756988783e12a779d946659f6cb1029066d62d\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#527569886d8a65f221ea48a39e91448283ea7d64\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#52756988f017887ce2a441ccbbb5ff4ef8236de2\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#52756988cefa8db6a865416ebd41b281658cbd0c\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"52756988783e12a779d946659f6cb1029066d62d\" active=\"true\" name=\"Data Access\" ><h3 id=\"MiMM_SBILabDataset:MicroscopicImagesofMultipleMyeloma(MiMM_SBILab)-DataAccess\">Data Access<\/h3><div class=\"table-wrap\"><table class=\"wrapped fixed-width confluenceTable\" style=\"width: 94.3193%;\"><colgroup><col style=\"width: 25.1058%;\"\/><col style=\"width: 43.7637%;\"\/><col style=\"width: 31.005%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Images (BMP, 1.27GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/faspex.cancerimagingarchive.net\/aspera\/faspex\/external_deliveries\/67?passcode=80a45e497421c180f037e4044ae6c38f798015eb\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/pathdb.cancerimagingarchive.net\/imagesearch?f[0]=collection:mimm_sbilab\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><\/p><\/div><p>(Download and apply the\u00a0<a href=\"https:\/\/www.ibm.com\/aspera\/connect\/\" class=\"external-link\" rel=\"nofollow\">IBM-Aspera-Connect plugin\u00a0<\/a>to your browser to retrieve this faspex package)\u00a0<\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Annotated plasma cell images (PDF)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/52756988\/Annotated_PPT_MM_Data.pdf?version=1&amp;modificationDate=1615575877898&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><span class=\"confluence-link\"><br\/><\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\">\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><br\/><\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><\/div><div class=\"tabs-pane \" id=\"527569886d8a65f221ea48a39e91448283ea7d64\" name=\"Detailed Description\" ><h3 id=\"MiMM_SBILabDataset:MicroscopicImagesofMultipleMyeloma(MiMM_SBILab)-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup> <col\/> <col\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><div class=\"tablesorter-header-inner\"><p>Image Statistics<\/p><\/div><\/div><\/th><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><div class=\"tablesorter-header-inner\"><p><br\/><\/p><\/div><\/div><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td class=\"confluenceTd\"><p>Pathology<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Participants<\/p><\/td><td class=\"confluenceTd\"><p>5<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td class=\"confluenceTd\"><p>5<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\"><p>85<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images Size (GB)<\/td><td colspan=\"1\" class=\"confluenceTd\">1.27<\/td><\/tr><\/tbody><\/table><\/div><\/div><div class=\"tabs-pane \" id=\"52756988f017887ce2a441ccbbb5ff4ef8236de2\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"MiMM_SBILabDataset:MicroscopicImagesofMultipleMyeloma(MiMM_SBILab)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy<\/h3><p class=\"auto-cursor-target\">\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(51,51,51);text-decoration: none;\">Gupta, R., &amp; Gupta, A. (2019). <strong>MiMM_SBILab Dataset: Microscopic Images of Multiple Myeloma [Data set].<\/strong> The Cancer Imaging Archive. <a href=\"https:\/\/doi.org\/10.7937\/tcia.2019.pnn6aypl\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/tcia.2019.pnn6aypl<\/a><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Gupta, A., Duggal, R., Gehlot, S., Gupta, R., Mangal, A., Kumar, L., Thakkar, N., &amp; Satpathy, D. (2020). <strong>GCTI-SN: Geometry-inspired chemical and tissue invariant stain normalization of microscopic medical images.<\/strong> Medical Image Analysis, 65, 101788. <a href=\"https:\/\/doi.org\/10.1016\/j.media.2020.101788\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1016\/j.media.2020.101788<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Gupta, A., Mallick, P., Sharma, O., Gupta, R., &amp; Duggal, R. (2018). <strong style=\"letter-spacing: 0.0px;\">PCSeg: Color model driven probabilistic multiphase level set based tool for plasma cell segmentation in multiple myeloma.<\/strong><span style=\"letter-spacing: 0.0px;\"> PLOS ONE, 13(12), e0207908. <\/span><a href=\"https:\/\/doi.org\/10.1371\/journal.pone.0207908\" style=\"letter-spacing: 0.0px;\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1371\/journal.pone.0207908<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., &amp; Prior, F. (2013).<strong> The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository.<\/strong> Journal of Digital Imaging, 26(6), 1045\u20131057. <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/a><\/p><\/div><\/div><h3 id=\"MiMM_SBILabDataset:MicroscopicImagesofMultipleMyeloma(MiMM_SBILab)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains<\/span> <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\"> a list of publications<\/a> <span> which leverage TCIA data. <\/span> If you have a manuscript you'd like to add please <a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\">contact TCIA's Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"52756988cefa8db6a865416ebd41b281658cbd0c\" name=\"Versions\" ><h3 id=\"MiMM_SBILabDataset:MicroscopicImagesofMultipleMyeloma(MiMM_SBILab)-Version1(Current):Updated2019\/03\/25\">Version 1 (Current): Updated 2019\/03\/25<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 61.5013%;\"><colgroup> <col style=\"width: 27.3479%;\"\/> <col style=\"width: 72.761%;\"\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\"><span>Data Type<\/span><\/th><th class=\"confluenceTh\"><span>Download all or Query\/Filter<\/span><\/th><\/tr><tr><td class=\"confluenceTd\"><span>Images (BMP, 1.27GB)<\/span><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/faspex.cancerimagingarchive.net\/aspera\/faspex\/external_deliveries\/67?passcode=80a45e497421c180f037e4044ae6c38f798015eb\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/pathdb.cancerimagingarchive.net\/imagesearch?f[0]=collection:mimm_sbilab\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p>(Download and apply the\u00a0<a href=\"https:\/\/www.ibm.com\/aspera\/connect\/\" class=\"external-link\" rel=\"nofollow\">IBM-Aspera-Connect plugin\u00a0<\/a>to your browser to retrieve this faspex package)\u00a0<\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Annotated plasma cell images (PDF)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/52756988\/Annotated_PPT_MM_Data.pdf?version=1&amp;modificationDate=1615575877898&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p><br\/><\/p><\/div><\/div><\/div><\/div><\/div><\/div>\n<\/div>\n<div class=\"cell aside\" data-type=\"aside\">\n<div class=\"innerCell\">\n<p><br\/><\/p><p style=\"text-align: left;\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" width=\"300\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/Public\/MiMM_SBILab%20Dataset:%20Microscopic%20Images%20of%20Multiple%20Myeloma%20(MiMM_SBILab)\/image2019-6-10_15-42-35.png?api=v2\"><\/span><\/p><p style=\"text-align: left;\"><br\/><\/p><p style=\"text-align: left;\"><br\/><\/p><p style=\"text-align: left;\"><br\/><\/p><p style=\"text-align: left;\"><br\/><\/p><p style=\"text-align: left;\"><br\/><\/p><\/div>\n<\/div>\n<\/div>\n<\/div>","versions":false,"additional_resources":"","cancer_locations":["Bone"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"","collection_status":"Complete","publications_using":"<ul><li>Ritu Gupta, Pramit Mallick, Rahul Duggal, Anubha Gupta, and Ojaswa Sharma, \"Stain Color Normalization and Segmentation of Plasma Cells in Microscopic Images as a Prelude to Development of Computer Assisted Automated Disease Diagnostic Tool in Multiple Myeloma,\" 16th International Myeloma Workshop (IMW), India, March 2017 <a href=\"https:\/\/doi.org\/10.1016\/j.clml.2017.03.178\">https:\/\/doi.org\/10.1016\/j.clml.2017.03.178<\/a><\/li><\/ul>\n<br\/>","species":["Human"],"collection_title":"MiMM_SBILab Dataset: Microscopic Images of Multiple Myeloma","detailed_description":"","related_analysis_results":false,"subjects":"5","collection_short_title":"MiMM_SBILab","data_types":["Pathology"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":["Image Analyses"],"collection_featured_image":false,"collection_summary":"Microscopic images were captured from bone marrow aspirate slides of patients diagnosed with multiple myeloma as per the standard guidelines. Slides were stained using Jenner- Giemsa stain. Images were captured at 1000x magnification using Nikon Eclipse-200 microscope equipped with a digital camera. Images were captured in raw BMP format with a size of 2560x1920 pixels. In all, this dataset consists of 85 images. All these 85 images were stain normalized using our in-house methodology before being used for segmentation. These stain normalized images have been provided as the annotated dataset with plasma cells marked in all image slides contained in a presentation for the ready reference of readers.\n<h4><strong>Additional Notes<\/strong><\/h4>\nThis collection has also been uploaded to the Harvard Blood Cancer Dataverse website. Please refer to <a href=\"https:\/\/dataverse.harvard.edu\/dataset.xhtml?persistentId=doi:10.7910\/DVN\/XCX7ST\">DOI 10.7910\/DVN\/XCX7ST<\/a> for more information.","collection_acknowledgements":"","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5628"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5628"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5628"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}