{"id":5616,"date":"2023-09-04T03:12:50","date_gmt":"2023-09-04T03:12:50","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/pdmr-425362-245-t\/"},"modified":"2023-09-13T11:59:58","modified_gmt":"2023-09-13T11:59:58","slug":"pdmr-425362-245-t","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/pdmr-425362-245-t\/","title":{"rendered":"PDMR-425362-245-T"},"featured_media":7899,"template":"","citation-tax":[],"cancer_types":["Melanoma"],"citations":[4508,2925],"collection_doi":"10.7937\/TCIA.2020.7YRS-7J97","collection_download_info":"Click the Versions tab for more info about data releases.","collection_downloads":[5089,5090,5091,5092,5093],"full_export":"<h1 id=\"Imagingcharacterizationofametastaticpatientderivedmodelofmelanoma:(PDMR425362245T)-Summary\">Summary<\/h1><div class=\"wiki-content\">Pre-clinical animal models of spontaneous metastatic cancer are infrequent; the few that exist are resource intensive because determination of the presence of metastatic disease, metastatic burden, and response to therapy normally require multiple timed cohorts with animal sacrifice and extensive pathological examination. We identified and characterized a patient derived xenograft model with metastatic potential, melanoma xenograft 425362-245-T. In this study we performed a detailed imaging characterization (workflow below) of this model, which develops spontaneous lung metastases, details are provided in the attached standard operating procedures. Tumors in half of the mice were resected in the range 200-300 mm<sup>3<\/sup> size; tumors in the other half were allowed to grow until it was necessary to euthanize them because of tumor size.<p><span class=\"confluence-embedded-file-wrapper image-center-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image image-center\" draggable=\"false\" width=\"1000\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/Public\/Imaging%20characterization%20of%20a%20metastatic%20patient%20derived%20model%20of%20melanoma:%20(PDMR-425362-245-T)\/PDMR%202.png?api=v2\"><\/span><\/p><p>The imaging characteristics of\u00a0this model (<a href=\"https:\/\/pdmdb.cancer.gov\/pls\/apex\/f?p=101:3:7743108209191::NO:3:P3_PATIENTSEQNBR:1566\" class=\"external-link\" rel=\"nofollow\">PDMR-425362-245-T<\/a>) which is available from the National Cancer Institute Patient-Derived Models\u00a0Repository (<a href=\"https:\/\/pdmr.cancer.gov\/\" class=\"external-link\" rel=\"nofollow\">https:\/\/pdmr.cancer.gov\/<\/a>), is highly favorable for preclinical research studies of\u00a0metastatic disease when used in conjunction with non-contrast T2 weighted MRI.<\/p><h3 id=\"Imagingcharacterizationofametastaticpatientderivedmodelofmelanoma:(PDMR425362245T)-Results:Melanoma(PDMR-425362-245-T)\">Results: <strong>Melanoma (PDMR-425362-245-T)<\/strong><\/h3><p><br\/><\/p><p><strong>Table 1<\/strong>: Penetrance and location of pathological confirmed metastatic lesion(s).<\/p><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 93.4536%;\"><colgroup> <col style=\"width: 11.731%;\"\/> <col style=\"width: 28.8507%;\"\/> <col style=\"width: 20.6485%;\"\/> <col style=\"width: 20.0286%;\"\/><col style=\"width: 18.598%;\"\/> <\/colgroup><tbody><tr><td style=\"text-align: center;\" class=\"confluenceTd\"><p><strong># animals in group<\/strong><\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p><strong># animals that displayed metastasis in MRI and confirmed by Pathology<\/strong><\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p><strong>Pathology confirmation of MRI (primary imaging site)<\/strong><\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p><strong>Other confirmed Location (s)<\/strong><\/p><\/td><td style=\"text-align: center;\" colspan=\"1\" class=\"confluenceTd\"><p><strong>Mouse ID: MRI with pathology confirmation of metastasis<\/strong><\/p><\/td><\/tr><tr><td style=\"text-align: center;\" class=\"confluenceTd\"><p><br\/><\/p><p><span style=\"background-color: rgb(255,255,255);letter-spacing: 0.0px;\">10 (non-resected)<\/span><\/p><p><br\/><\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>4<\/p><p>(6 mice were EU due to xenograft size prior to observation of metastasis)<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p><br\/><\/p><p>Lung<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p><br\/><\/p><p>Kidney<\/p><\/td><td style=\"text-align: center;\" colspan=\"1\" class=\"confluenceTd\"><p><br\/><\/p><p>1512, 1516, 1518, 1520<\/p><\/td><\/tr><tr><td style=\"text-align: center;\" class=\"confluenceTd\"><p><span style=\"background-color: rgb(255,255,255);letter-spacing: 0.0px;\">10 (resected)<\/span><\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p><span style=\"background-color: rgb(255,255,255);letter-spacing: 0.0px;\">10<\/span><\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>Lung<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>Kidney, Liver, Pancreas<\/p><p><br\/><\/p><\/td><td style=\"text-align: center;\" colspan=\"1\" class=\"confluenceTd\"><p>1506, 1508, 1509, 1510, 1511, 1515, 1517, 1519, 1521, 1523<\/p><\/td><\/tr><\/tbody><\/table><\/div><\/div><p><br\/><\/p><p>Percent penetrance with respect to the average time-to-metastasis for non-resected (plot A: time from implant) and resected (plot B: time from tumor resection) cohorts.<\/p><p><br\/><\/p><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup> <col\/> <col\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\"><div class=\"content-wrapper\"><p><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image\" draggable=\"false\" width=\"550\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/Public\/Imaging%20characterization%20of%20a%20metastatic%20patient%20derived%20model%20of%20melanoma:%20(PDMR-425362-245-T)\/PDMR%20Melanoma%201.png?api=v2\"><\/span><\/p><p>Plot A<\/p><\/div><\/th><th class=\"confluenceTh\"><div class=\"content-wrapper\"><p><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image\" draggable=\"false\" width=\"550\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/Public\/Imaging%20characterization%20of%20a%20metastatic%20patient%20derived%20model%20of%20melanoma:%20(PDMR-425362-245-T)\/PDMR%20Melanoma%202.png?api=v2\"><\/span><\/p><p>Plot B<\/p><\/div><\/th><\/tr><\/tbody><\/table><\/div><p><br\/><\/p><p><span>PET\/CT Characterization of the primary tumor:\u00a0 Baseline PET (SOP attached) were performed when tumor reached an approximate 200 mm<sup>3<\/sup>.\u00a0\u00a0 Average SUVmax values (n=5) were calculated; [<sup>18<\/sup>F]FDG: 2.7 \u00b1 0.5 and [<sup>18<\/sup>F]FLT: 2.0 \u00b1 0.3.<\/span><\/p><h3 id=\"Imagingcharacterizationofametastaticpatientderivedmodelofmelanoma:(PDMR425362245T)-Conclusion:\">Conclusion:<\/h3><p>Melanoma PDMR-425362-245-T model can be challenging due to the rapid growth of the xenograft and regrowth.\u00a0 Metastases was well observed on T2 MRI imaging allowing non-invasive evaluation in treatment trials.<\/p><h3 id=\"Imagingcharacterizationofametastaticpatientderivedmodelofmelanoma:(PDMR425362245T)-Acknowledgements\"><span style=\"background-color: rgb(255,255,255);letter-spacing: 0.0px;\">Acknowledgements<\/span><\/h3><div class=\"wiki-content\"><p>We would like to acknowledge the individuals and institutions that have provided data for this collection:<\/p><ul><li>Frederick National Laboratory for Cancer Research \u2013 Special Thanks to Joseph D. Kalen, PhD, Lilia V. Ileva, MS, Lisa A Riffle, Nimit Patel, Keita Saito, PhD, Yvonne Evrard, PhD, Elijah Edmondson, DVM, PhD, Jessica Phillips, Simone Difilippantonio, PhD, Chelsea Sanders, Amy James, Lia Thang, Ulrike Wagner, Yanling Liu, PhD, John B. Freymann, and Justin Kirby.<\/li><li>Division of Cancer Therapeutics and Diagnosis\/National Cancer Institute - James L. Tatum, MD, Paula M Jacobs, PhD, Melinda G. Hollingshead, DVM, and James H. Doroshow, MD<\/li><li>PixelMed Publishing \u2013 Special Thanks to David A. Clunie, MD<\/li><li>University of Arkansas for Medical Sciences \u2013 Special Thanks to Kirk E. Smith<\/li><li><span style=\"color: rgb(33,37,41);\">This project has been funded in whole or in part with Federal funds from the National Cancer Institute, National Institutes of Health, under Contract Number HHSN261201500003I. The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organizations imply endorsement by the U.S. Government.<\/span><\/li><\/ul><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#70223880d9feb32f09164c8981b8ffce21b4c40f\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#7022388081dd37a6f3724d54a490b30204f588d0\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#702238800dea8e974ec44f7394105669fe6a18af\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#702238804ac1d275b3d0461c85cdeac9233955a8\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"70223880d9feb32f09164c8981b8ffce21b4c40f\" active=\"true\" name=\"Data Access\" ><h3 id=\"Imagingcharacterizationofametastaticpatientderivedmodelofmelanoma:(PDMR425362245T)-DataAccess\">Data Access<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 77.621%;\"><colgroup><col style=\"width: 34.7643%;\"\/><col style=\"width: 35.3802%;\"\/><col style=\"width: 29.8919%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Images (DICOM, 2.3 GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70223880\/PDMR-425362-245-T.tcia?version=1&amp;modificationDate=1587751871622&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/public.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=PDMR-425362-245-T\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><span class=\"confluence-link\"> <\/span>\u00a0<a href=\"https:\/\/public.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=PDMR-425362-245-T\" class=\"external-link\" rel=\"nofollow\">\u00a0<\/a><\/p><p>(Download requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\">\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/4.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 4.0<\/a><br\/><\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\"><span style=\"color: rgb(0,0,0);text-decoration: none;\">Tracking spreadsheet for\u00a0PDMR-425362-245-T<\/span><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70223880\/SAIP%20PDM%20Overview_TCIA.xlsx?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/4.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 4.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\"><span style=\"color: rgb(0,0,0);text-decoration: none;\">SR Conversion Routine (Converts a tracking spreadsheet into a DICOM Structured Report)<\/span><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70223880\/MakeDICOMSRFromSAIPPDMOverview_SourceCode_20200831.zip?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/4.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 4.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Standard Operating Procedure 50101 MRI T2 Weighted Non-Contrast Protocol Single Mouse Pulmonary Gated and Multi-Mouse Non-Gated<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70223880\/SOP50101_MRI%20T2%20Weighted%20Non-Contrast%20Protocol_Single%20Mouse%20Pulmonary%20Gated%20and%20Multi-Mouse%20Non-Gated.pdf?version=1&amp;modificationDate=1588191058265&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/4.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 4.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Standard Operating Procedure 50102 Positron Emission Tomography (PET) imaging protocol<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70223880\/SOP50102_Positron%20Emission%20Tomography%20%28PET%29%20imaging%20protocol.pdf?version=1&amp;modificationDate=1588191195582&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/4.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 4.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p class=\"auto-cursor-target\">Click the Versions tab for more info about data releases.<\/p><p class=\"auto-cursor-target\">\n<h3 id=\"Imagingcharacterizationofametastaticpatientderivedmodelofmelanoma:(PDMR425362245T)-AdditionalResourcesforthisDataset\">Additional Resources for this Dataset<\/h3>\n<p>The National Cancer Institute (NCI) has developed a national repository of Patient-Derived Models (PDMs) comprised of patient-derived xenografts (PDXs), in vitro patient-derived tumor cell cultures (PDCs) and cancer associated fibroblasts (CAFs) as well as patient-derived organoids (PDOrg). These models serve as a resource for public-private partnerships and for academic drug discovery efforts. These PDMs are clinically-annotated with molecular information and made available in the <a href=\"https:\/\/pdmr.cancer.gov\/default.htm\" class=\"external-link\" rel=\"nofollow\">Patient-Derived Model Repository<\/a>.  Data related to the specific subjects in this Collection can be found at:<\/p>\n<\/p><ul><li class=\"auto-cursor-target\"><a href=\"https:\/\/pdmdb.cancer.gov\/web\/apex\/f?p=101:4:::NO:4:P4_SPECIMENSEQNBR:2744\" class=\"external-link\" rel=\"nofollow\">PDMR-425362-245-T<\/a><\/li><\/ul><p class=\"auto-cursor-target\"><span style=\"color: rgb(33,37,41);\">The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.<\/span><\/p><ul style=\"text-align: left;\"><li class=\"auto-cursor-target\"><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=pdmr_425362_245_t\" class=\"external-link\" rel=\"nofollow\">Imaging Data Commons (IDC)<\/a><span>\u00a0<\/span>(Imaging Data)<\/li><\/ul><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"7022388081dd37a6f3724d54a490b30204f588d0\" name=\"Detailed Description\" ><h3 id=\"Imagingcharacterizationofametastaticpatientderivedmodelofmelanoma:(PDMR425362245T)-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 32.449844%;\"><colgroup> <col style=\"width: 53.04033%;\"\/> <col style=\"width: 46.951797%;\"\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><div class=\"tablesorter-header-inner\"><p>Image Statistics<\/p><\/div><\/div><\/th><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><div class=\"tablesorter-header-inner\"><p><br\/><\/p><\/div><\/div><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td class=\"confluenceTd\"><p>MR, SR<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Subjects<\/p><\/td><td class=\"confluenceTd\"><p>20<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td class=\"confluenceTd\"><p>115<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td class=\"confluenceTd\"><p>210<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\"><p>3509<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images Size (GB)<\/td><td colspan=\"1\" class=\"confluenceTd\">2.3 GB<\/td><\/tr><\/tbody><\/table><\/div><p class=\"auto-cursor-target\">In addition to images, this collection includes Raw Data Storage SOP Class instances with <strong>MR Modality<\/strong>, generated by a Philips MR scanner; this data is not useful to anyone without the proprietary software to interpret it.<\/p><\/div><div class=\"tabs-pane \" id=\"702238800dea8e974ec44f7394105669fe6a18af\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"Imagingcharacterizationofametastaticpatientderivedmodelofmelanoma:(PDMR425362245T)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy<\/h3><p class=\"auto-cursor-target\">\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(34,34,34);\"> <span style=\"color: rgb(33,37,41);\">Tatum, J. L., Kalen, J. D., Jacobs, P. M., Ileva, L. V., Riffle, L. A., Keita, S., Patel, N., Sanders, C., James, A., Difilippantonio, S., Thang, L., Hollingshead, M. G., Phillips, J., Edmondson, E., Evrard, Y., Clunie, D. A., Liu, Y., Smith, K. E., Wagner, U., \u2026 Doroshow, J. H. (2020). <em>Imaging characterization of a metastatic patient derived model of melanoma: (PDMR-425362-245-T)<\/em> [Data set]. The Cancer Imaging Archive. <a href=\"https:\/\/doi.org\/10.7937\/TCIA.2020.7YRS-7J97\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/TCIA.2020.7YRS-7J97<\/a> <\/span> <span style=\"color: rgb(33,37,41);\"> <br\/><\/span> <\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F.\u00a0<strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/a><\/p><\/div><\/div><h3 id=\"Imagingcharacterizationofametastaticpatientderivedmodelofmelanoma:(PDMR425362245T)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains<\/span> <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\"> a list of publications<\/a> <span> which leverage TCIA data. <\/span> If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\"> contact the TCIA Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"702238804ac1d275b3d0461c85cdeac9233955a8\" name=\"Versions\" ><h3 id=\"Imagingcharacterizationofametastaticpatientderivedmodelofmelanoma:(PDMR425362245T)-Version2(Current):Updated2021\/02\/17\">Version 2 (Current): Updated 2021\/02\/17<\/h3><div class=\"table-wrap\"><table class=\"relative-table wrapped confluenceTable\"><colgroup><col style=\"width: 57.3529%;\"\/><col style=\"width: 42.6471%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td class=\"confluenceTd\">Images (DICOM, 2.3 GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\">\u00a0<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70223880\/PDMR-425362-245-T.tcia?version=1&amp;modificationDate=1587751871622&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/public.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=PDMR-425362-245-T\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><span class=\"confluence-link\"> <\/span>\u00a0<a href=\"https:\/\/public.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=PDMR-425362-245-T\" class=\"external-link\" rel=\"nofollow\">\u00a0<\/a><\/p><p>(Download requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\"><span style=\"color: rgb(0,0,0);text-decoration: none;\">Tracking spreadsheet for\u00a0PDMR-425362-245-T<\/span><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70223880\/SAIP%20PDM%20Overview_TCIA.xlsx?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\"><span style=\"color: rgb(0,0,0);text-decoration: none;\">SR Conversion Routine (Converts a tracking spreadsheet into a DICOM Structured Report)<\/span><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70223880\/MakeDICOMSRFromSAIPPDMOverview_SourceCode_20200831.zip?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Standard Operating Procedure 50101 MRI T2 Weighted Non-Contrast Protocol Single Mouse Pulmonary Gated and Multi-Mouse Non-Gated<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70223880\/SOP50101_MRI%20T2%20Weighted%20Non-Contrast%20Protocol_Single%20Mouse%20Pulmonary%20Gated%20and%20Multi-Mouse%20Non-Gated.pdf?version=1&amp;modificationDate=1588191058265&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Standard Operating Procedure 50102 Positron Emission Tomography (PET) imaging protocol<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70223880\/SOP50102_Positron%20Emission%20Tomography%20%28PET%29%20imaging%20protocol.pdf?version=1&amp;modificationDate=1588191195582&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p class=\"auto-cursor-target\"><span style=\"color: rgb(0,0,0);text-decoration: none;\">Added two supplementary files: 1) an example tracking spreadsheet for multi-cohort murine studies and 2) an SR Conversion Routine to convert the tracking spreadsheet parameters into a DICOM Structured Report (SR).<\/span><\/p><h3 id=\"Imagingcharacterizationofametastaticpatientderivedmodelofmelanoma:(PDMR425362245T)-Version1:Updated2020\/05\/22\">Version 1: Updated 2020\/05\/22<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"letter-spacing: 0.0px;width: 68.4423%;\"><colgroup><col style=\"width: 67.7128%;\"\/><col style=\"width: 32.2575%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td class=\"confluenceTd\">Images (DICOM, 2.3 GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70223880\/PDMR-425362-245-T.tcia?version=1&amp;modificationDate=1587751871622&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/public.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=PDMR-425362-245-T\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span>\u00a0<a href=\"https:\/\/public.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=PDMR-425362-245-T\" class=\"external-link\" rel=\"nofollow\">\u00a0<\/a><\/p><p>(Download requires\u00a0the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Standard Operating Procedure 50101 MRI T2 Weighted Non-Contrast Protocol Single Mouse Pulmonary Gated and Multi-Mouse Non-Gated<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70223880\/SOP50101_MRI%20T2%20Weighted%20Non-Contrast%20Protocol_Single%20Mouse%20Pulmonary%20Gated%20and%20Multi-Mouse%20Non-Gated.pdf?version=1&amp;modificationDate=1588191058265&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Standard Operating Procedure 50102 Positron Emission Tomography (PET) imaging protocol<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70223880\/SOP50102_Positron%20Emission%20Tomography%20%28PET%29%20imaging%20protocol.pdf?version=1&amp;modificationDate=1588191195582&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><\/div><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p>","versions":false,"additional_resources":"The National Cancer Institute (NCI) has developed a national repository of Patient-Derived Models (PDMs) comprised of patient-derived xenografts (PDXs), in vitro patient-derived tumor cell cultures (PDCs) and cancer associated fibroblasts (CAFs) as well as patient-derived organoids (PDOrg). These models serve as a resource for public-private partnerships and for academic drug discovery efforts. These PDMs are clinically-annotated with molecular information and made available in the <a href=\"https:\/\/pdmr.cancer.gov\/default.htm\">Patient-Derived Model Repository<\/a>.  Data related to the specific subjects in this Collection can be found at:\n \n<ul><li><a href=\"https:\/\/pdmdb.cancer.gov\/web\/apex\/f?p=101:4:::NO:4:P4_SPECIMENSEQNBR:2744\">PDMR-425362-245-T<\/a><\/li><\/ul>\nThe NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.\n<ul><li><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=pdmr_425362_245_t\">Imaging Data Commons (IDC)<\/a>\u00a0(Imaging Data)<\/li><\/ul>\n<br\/>","cancer_locations":["Abdomen"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"","collection_status":"Complete","publications_using":"TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\"> a list of publications<\/a>  which leverage TCIA data.  If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact the TCIA Helpdesk<\/a>.","species":["Mouse"],"collection_title":"Imaging characterization of a metastatic patient derived model of melanoma:","detailed_description":"In addition to images, this collection includes Raw Data Storage SOP Class instances with <strong>MR Modality<\/strong>, generated by a Philips MR scanner; this data is not useful to anyone without the proprietary software to interpret it.","related_analysis_results":false,"subjects":"20","collection_short_title":"PDMR-425362-245-T","data_types":["MR","SR"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":["Clinical"],"collection_featured_image":{"ID":"7899","post_author":"6","post_date":"2023-09-13 03:47:41","post_date_gmt":"2023-09-13 03:47:41","post_content":"","post_title":"PDMR-2","post_excerpt":"","post_status":"inherit","comment_status":"open","ping_status":"closed","post_password":"","post_name":"pdmr-2","to_ping":"","pinged":"","post_modified":"2023-09-13 11:59:45","post_modified_gmt":"2023-09-13 11:59:45","post_content_filtered":"","post_parent":"5612","guid":"https:\/\/cm.vastapps.dev\/wp-content\/uploads\/PDMR-2.png","menu_order":"0","post_type":"attachment","post_mime_type":"image\/png","comment_count":"0","pod_item_id":"7899"},"collection_summary":"Pre-clinical animal models of spontaneous metastatic cancer are infrequent; the few that exist are resource intensive because determination of the presence of metastatic disease, metastatic burden, and response to therapy normally require multiple timed cohorts with animal sacrifice and extensive pathological examination. We identified and characterized a patient derived xenograft model with metastatic potential, melanoma xenograft 425362-245-T. In this study we performed a detailed imaging characterization (workflow below) of this model, which develops spontaneous lung metastases, details are provided in the attached standard operating procedures. Tumors in half of the mice were resected in the range 200-300 mm<sup>3<\/sup> size; tumors in the other half were allowed to grow until it was necessary to euthanize them because of tumor size.<p><\/p><p>The imaging characteristics of\u00a0this model (<a href=\"https:\/\/pdmdb.cancer.gov\/pls\/apex\/f?p=101:3:7743108209191::NO:3:P3_PATIENTSEQNBR:1566\">PDMR-425362-245-T<\/a>) which is available from the National Cancer Institute Patient-Derived Models\u00a0Repository (<a href=\"https:\/\/pdmr.cancer.gov\/\">https:\/\/pdmr.cancer.gov\/<\/a>), is highly favorable for preclinical research studies of\u00a0metastatic disease when used in conjunction with non-contrast T2 weighted MRI.<\/p><h3>Results: <strong>Melanoma (PDMR-425362-245-T)<\/strong><\/h3><p><strong>Table 1<\/strong>: Penetrance and location of pathological confirmed metastatic lesion(s).<\/p><div><table><colgroup> <col\/> <col\/> <col\/> <col\/><col\/> <\/colgroup><tbody><tr><td><p><strong># animals in group<\/strong><\/p><\/td><td><p><strong># animals that displayed metastasis in MRI and confirmed by Pathology<\/strong><\/p><\/td><td><p><strong>Pathology confirmation of MRI (primary imaging site)<\/strong><\/p><\/td><td><p><strong>Other confirmed Location (s)<\/strong><\/p><\/td><td colspan=\"1\"><p><strong>Mouse ID: MRI with pathology confirmation of metastasis<\/strong><\/p><\/td><\/tr><tr><td><p>10 (non-resected)<\/p><\/td><td><p>4<\/p><p>(6 mice were EU due to xenograft size prior to observation of metastasis)<\/p><\/td><td><p>Lung<\/p><\/td><td><p>Kidney<\/p><\/td><td colspan=\"1\"><p>1512, 1516, 1518, 1520<\/p><\/td><\/tr><tr><td><p>10 (resected)<\/p><\/td><td><p>10<\/p><\/td><td><p>Lung<\/p><\/td><td><p>Kidney, Liver, Pancreas<\/p><\/td><td colspan=\"1\"><p>1506, 1508, 1509, 1510, 1511, 1515, 1517, 1519, 1521, 1523<\/p><\/td><\/tr><\/tbody><\/table><\/div>\n<br\/>\nPercent penetrance with respect to the average time-to-metastasis for non-resected (plot A: time from implant) and resected (plot B: time from tumor resection) cohorts.\n<br\/>\n<table><colgroup> <col\/> <col\/> <\/colgroup><tbody><tr><th><div><p><div class=\"cm-content-image\"><a href=\"\/wp-content\/uploads\/PDMR-Melanoma-1.png\" rel=\"prettyPhoto noopener\" target=\"_blank\"><img src=\"\/wp-content\/uploads\/PDMR-Melanoma-1.png\"\/><\/a><\/div><\/p><p>Plot A<\/p><\/div><\/th><th><div><p><div class=\"cm-content-image\"><a href=\"\/wp-content\/uploads\/PDMR-Melanoma-2.png\" rel=\"prettyPhoto noopener\" target=\"_blank\"><img src=\"\/wp-content\/uploads\/PDMR-Melanoma-2.png\"\/><\/a><\/div><\/p><p>Plot B<\/p><\/div><\/th><\/tr><\/tbody><\/table>\n<br\/>\nPET\/CT Characterization of the primary tumor:\u00a0 Baseline PET (SOP attached) were performed when tumor reached an approximate 200 mm<sup>3<\/sup>.\u00a0\u00a0 Average SUVmax values (n=5) were calculated; [<sup>18<\/sup>F]FDG: 2.7 \u00b1 0.5 and [<sup>18<\/sup>F]FLT: 2.0 \u00b1 0.3.\n<h3>Conclusion:<\/h3>\nMelanoma PDMR-425362-245-T model can be challenging due to the rapid growth of the xenograft and regrowth.\u00a0 Metastases was well observed on T2 MRI imaging allowing non-invasive evaluation in treatment trials.","collection_acknowledgements":"Acknowledgements\nWe would like to acknowledge the individuals and institutions that have provided data for this collection:\n<ul><li>Frederick National Laboratory for Cancer Research \u2013 Special Thanks to Joseph D. Kalen, PhD, Lilia V. Ileva, MS, Lisa A Riffle, Nimit Patel, Keita Saito, PhD, Yvonne Evrard, PhD, Elijah Edmondson, DVM, PhD, Jessica Phillips, Simone Difilippantonio, PhD, Chelsea Sanders, Amy James, Lia Thang, Ulrike Wagner, Yanling Liu, PhD, John B. Freymann, and Justin Kirby.<\/li><li>Division of Cancer Therapeutics and Diagnosis\/National Cancer Institute - James L. Tatum, MD, Paula M Jacobs, PhD, Melinda G. Hollingshead, DVM, and James H. Doroshow, MD<\/li><li>PixelMed Publishing \u2013 Special Thanks to David A. Clunie, MD<\/li><li>University of Arkansas for Medical Sciences \u2013 Special Thanks to Kirk E. Smith<\/li><li>This project has been funded in whole or in part with Federal funds from the National Cancer Institute, National Institutes of Health, under Contract Number HHSN261201500003I. The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organizations imply endorsement by the U.S. Government.<\/li><\/ul>","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5616"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media\/7899"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5616"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5616"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}