{"id":5604,"date":"2023-09-04T03:11:53","date_gmt":"2023-09-04T03:11:53","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/head-neck-pet-ct\/"},"modified":"2023-09-13T11:59:21","modified_gmt":"2023-09-13T11:59:21","slug":"head-neck-pet-ct","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/head-neck-pet-ct\/","title":{"rendered":"HEAD-NECK-PET-CT"},"featured_media":0,"template":"","citation-tax":[],"cancer_types":["Head and Neck Cancer"],"citations":[4488,4489,2925],"collection_doi":"10.7937\/K9\/TCIA.2017.8oje5q00","collection_download_info":"Some data in this collection contains images that could potentially be used to reconstruct a human face.  To safeguard the privacy of participants, users must sign and submit a <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\">TCIA Restricted License Agreement<\/a> to <a href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a> before accessing the data.\n\nClick the Versions tab for more info about data releases.","collection_downloads":[5055,5056,5057],"full_export":"<div class=\"contentLayout2\">\n<div class=\"columnLayout two-right-sidebar\" data-layout=\"two-right-sidebar\">\n<div class=\"cell normal\" data-type=\"normal\">\n<div class=\"innerCell\">\n<h2 id=\"HeadNeckPETCT-Summary\">Summary<\/h2><p><span>This collection contains FDG-PET\/CT and radiotherapy planning CT imaging data of\u00a0<span>298<\/span> <span>\u00a0<\/span>patients from four different institutions in Qu\u00e9bec with histologically proven head-and-neck cancer (H&amp;N) All patients had pre-treatment FDG-PET\/CT scans between April 2006 and November 2014, and within a median of 18 days (range: 6-66) before treatment. Dates in the TCIA images have been changed in the interest of de-identification; the same change was applied across all images, preserving the time intervals between serial scans.\u00a0\u00a0<span>These patients were all part of a study described in further detail\u00a0<\/span> <span>(treatment, image scanning protocols, etc.)<\/span> <span>\u00a0in the publication:<\/span> <\/span><\/p><div class=\"confluence-information-macro has-no-icon confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><div class=\"confluence-information-macro-body\"><span style=\"font-size: 11.0pt;font-family: Arial , sans-serif;color: black;\">Valli\u00e8res, M. <em>et al.<\/em> Radiomics strategies for risk assessment of tumour failure in head-and-neck cancer.<em> Sci Rep<\/em> <strong>7,<\/strong> 10117 (2017). doi: <\/span> <a href=\"http:\/\/dx.doi.org\/10.1038\/s41598-017-10371-5\" class=\"external-link\" rel=\"nofollow\">10.1038\/s41598-017-10371-5<\/a><\/div><\/div><p><span> <span> <strong> <u>Note:<\/u> <\/strong> <\/span> <span>\u00a0<em>Subsequent to publishing this manuscript\u00a0it was discovered images from\u00a0<\/em> <\/span> <em>two patients included in the analysis\u00a0had errors and should not be used in future studies.\u00a0 Therefore these have not been included\u00a0in this TCIA data set, leaving 298 patients of the original 300 analyzed.<\/em> <\/span><\/p><p><span>In the original study,\u00a093 of the 300 patients (31 %), the radiotherapy contours were directly drawn on the CT of the FDG-PET\/CT scan by expert radiation oncologists and thereafter used for treatment planning. For 207 of the 300 patients (69 %), the radiotherapy contours were drawn on a different CT scan dedicated to treatment planning and were propagated\/resampled to the FDG-PET\/CT scan reference frame using intensity-based free-form deformable registration with the software MIM<sup>\u00ae<\/sup>\u00a0(MIM software Inc., Cleveland, OH).<br\/><\/span> <br\/><span>Patients with recurrent H&amp;N cancer or with metastases at presentation, and patients receiving palliative treatment were excluded from the study. From the 300 patients, 48 received radiation alone (16 %) and 252 received chemo-radiation (84 %) with curative intent as part of treatment management. The median follow-up period of all patients was 43 months (range: 6-112). Patients that did not develop a locoregional recurrence or distant metastases during the follow-up period and that had a follow-up time smaller than 24 months were also excluded from the study. During the follow-up period, 45 patients developed a locoregional recurrence (15 %), 40 patients developed distant metastases (13 %) and 56 patients died (19 %).\u00a0\u00a0<\/span><\/p><p><span>We analyzed the FDG-PET and CT images of the 300 patients from four different cohorts for the risk assessment of locoregional recurrences (LR) and distant metastases in H&amp;N cancer. Prediction models combining radiomic and clinical variables were constructed via random forests and imbalance-adjustment strategies using two of the four cohorts. Independent validation of the prediction and prognostic performance of the models was carried out on the other two cohorts (LR: AUC = 0.69 and CI = 0.67; DM: AUC = 0.86 and CI = 0.88). Furthermore, the results obtained via Kaplan-Meier analysis demonstrated the potential of radiomics for assessing the risk of specific tumour outcomes using multiple stratification groups.<\/span><\/p><p><span>Please contact <a class=\"external-link\" href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" style=\"text-decoration: underline;text-align: left;\" rel=\"nofollow\">contact the TCIA Helpdesk<\/a>\u00a0for scientific or other inquiries about this dataset.\u00a0<\/span><\/p><h3 id=\"HeadNeckPETCT-Acknowledgements\">Acknowledgements<\/h3><p>We would like to acknowledge the individuals and institutions that have provided data for this collection:<\/p><ul><li><strong> <span style=\"color: rgb(0,0,0);\">McGill University, Montreal, Canada<\/span>\u00a0-\u00a0<\/strong>Special thanks to<strong>\u00a0Martin Valli\u00e8res\u00a0<\/strong>of\u00a0the Medical Physics Unit<\/li><\/ul><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#242838677b396752eaed4e9986c96e0c47b27405\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#24283867db839af241aa43368e508a9396c975f4\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#24283867d3f7efed09064fa0b382f6077dccca43\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#24283867ffc733559a924699a034cc850e1c21ab\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"242838677b396752eaed4e9986c96e0c47b27405\" active=\"true\" name=\"Data Access\" ><h3 id=\"HeadNeckPETCT-DataAccess\">Data Access<\/h3><p>\nSome data in this collection contains images that could potentially be used to reconstruct a human face.  To safeguard the privacy of participants, users must sign and submit a <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\" class=\"external-link\" rel=\"nofollow\">TCIA Restricted License Agreement<\/a> to <a href=\"mailto:help@cancerimagingarchive.net\" class=\"external-link\" rel=\"nofollow\">help@cancerimagingarchive.net<\/a> before accessing the data.<\/p><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><col\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Images\u00a0a<span style=\"color: rgb(38,44,49);\">nd Radiation Therapy Structures<\/span> (DICOM, 72.5 GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24283867\/Head-Neck-PET-CT-v2-doiJNLP-7hWXTIJS.tcia?version=1&amp;modificationDate=1534787032596&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/www.cancerimagingarchive.net\/nbia-search\/?CollectionCriteria=Head-Neck-PET-CT\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><\/p><\/div><p><br\/><\/p><p>(Download requires\u00a0the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>)<\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\">\n<a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\" class=\"external-link\" rel=\"nofollow\">TCIA Restricted<\/a><br\/><\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Clinical Data (XLS)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24283867\/INFOclinical_HN_Version2_30may2018.xlsx?version=1&amp;modificationDate=1528212498494&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\">\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><br\/><\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Names of GTV contours (XLS)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24283867\/INFO_GTVcontours_HN.xlsx?version=1&amp;modificationDate=1512142013165&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><span class=\"confluence-link\">\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><br\/><\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><h3 style=\"text-align: left;\" id=\"HeadNeckPETCT-AdditionalResourcesforthisDataset\">Additional Resources for this Dataset<\/h3><p>The following external resources have been made available by the data submitters.\u00a0 These are not hosted or supported by TCIA, but may be useful to researchers utilizing this collection.<\/p><ul><li class=\"xmsonormal\" style=\"text-align: left;\"><span style=\"color: black;\"><a href=\"https:\/\/github.com\/mvallieres\/radiomics\" class=\"external-link\" rel=\"nofollow\">Source Code<\/a><\/span><\/li><\/ul><\/div><div class=\"tabs-pane \" id=\"24283867db839af241aa43368e508a9396c975f4\" name=\"Detailed Description\" ><h3 id=\"HeadNeckPETCT-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup> <col\/> <col\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p>Collection Statistics<\/p><\/div><\/th><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p><br\/><\/p><\/div><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td class=\"confluenceTd\"><p>PET\/CT, <br\/>CT, <br\/>RT<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Participants<\/p><\/td><td class=\"confluenceTd\"><p>298\/300<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td class=\"confluenceTd\"><p>\u00a0504<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td class=\"confluenceTd\"><p>\u00a02661<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\"><p>123,271<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images Size (GB)<\/td><td colspan=\"1\" class=\"confluenceTd\">\u00a072.5<\/td><\/tr><\/tbody><\/table><\/div><p><br\/><\/p>We hope the available data and source code will facilitate the standardization and reproducibility of methods in the <em>radiomics<\/em>\u00a0community.<br\/><ul><li><span style=\"line-height: 1.42857;\"> <strong>Clinical Data<\/strong>\u00a0\u2013\u00a0<\/span>This spreadsheet includes patient information, histopathological type, tumour grade, outcome follow-up information (metastases, survival), etc.<span> <br\/><\/span><\/li><li><span> <strong>Names of GTV contours<\/strong> -- This spreadsheet contains all the names of the &quot;GTV primary&quot; and &quot;GTV lymph nodes&quot; structures (as found in the associated RTstruct files) used in the publication of (Valli\u00e8res <em>et al.<\/em>, <em>Sci Rep<\/em> <strong>7<\/strong>, 2017). Names of different structures are separated by commas in a given entry of the spreadsheet.<br\/><\/span><\/li><\/ul><ul><li><strong>Source Code<\/strong>\u00a0\u2013\u00a0All software code implemented in this work is freely shared under the GNU General Public License at:<a href=\"https:\/\/github.com\/mvallieres\/radiomics\" rel=\"nofollow\" class=\"external-link\">https:\/\/github.com\/mvallieres\/radiomics<\/a>.<\/li><\/ul><p><strong>Note:<\/strong> <span> \u00a0the images contain no private-vendor DICOM tags.<\/span><\/p><\/div><div class=\"tabs-pane \" id=\"24283867d3f7efed09064fa0b382f6077dccca43\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"HeadNeckPETCT-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy\u00a0<\/h3><p class=\"auto-cursor-target\">\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Martin Valli\u00e8res, Emily Kay-Rivest, L\u00e9o Jean Perrin, Xavier Liem, Christophe Furstoss, Nader Khaouam, Phuc F\u00e9lix Nguyen-Tan, Chang-Shu Wang, Khalil Sultanem.\u00a0(2017). <strong>Data from Head-Neck-PET-CT<\/strong>. The Cancer Imaging Archive. doi: <a href=\"https:\/\/doi.org\/10.7937\/K9\/TCIA.2017.8oje5q00\" class=\"external-link\" rel=\"nofollow\">10.7937\/K9\/TCIA.2017.8oje5q00<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Valli\u00e8res, M., Kay-Rivest, E., Perrin, L. J., Liem, X., Furstoss, C., Aerts, H. J. W. L., Khaouam, N., Nguyen-Tan, P. F., Wang, C.-S., Sultanem, K., Seuntjens, J., &amp; El Naqa, I. (2017). <strong>Radiomics strategies for risk assessment of tumour failure in head-and-neck cancer.<\/strong> In Scientific Reports (Vol. 7, Issue 1).\u00a0 DOI: <a href=\"https:\/\/doi.org\/10.1038\/s41598-017-10371-5\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1038\/s41598-017-10371-5<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F.\u00a0<strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository.<\/strong> Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045\u20131057).\u00a0 DOI: <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/a><\/p><\/div><\/div><h3 id=\"HeadNeckPETCT-OtherPublicationsUsingThisData\"><span style=\"font-size: 16.0px;line-height: 1.5;\">Other Publications Using This Data<\/span><\/h3><p><span>TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\">a list of publications<\/a> which leverage TCIA data. <\/span>If you have a manuscript you'd like to add please <a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\">contact TCIA's Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"24283867ffc733559a924699a034cc850e1c21ab\" name=\"Versions\" ><h3 id=\"HeadNeckPETCT-Version2(Current):Updated2018\/06\/07\">Version 2 (Current): Updated 2018\/06\/07<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup> <col\/> <col\/> <\/colgroup><tbody><tr><th colspan=\"1\" class=\"confluenceTh\">Data Type<\/th><th colspan=\"1\" class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\"><p>Images (DICOM, 72.5 GB)<\/p><p>NB: 298 of 300 subjects<\/p><\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24283867\/Head-Neck-PET-CT-v2-doiJNLP-7hWXTIJS.tcia?version=1&amp;modificationDate=1534787032596&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/www.cancerimagingarchive.net\/nbia-search\/?CollectionCriteria=Head-Neck-PET-CT\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><span class=\"confluence-link\">\u00a0<\/span><\/p><p><span class=\"confluence-link\">(Requires\u00a0<span>the <\/span> <a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a> <span>.<\/span>)<br\/><\/span><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Clinical Data (XLS)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24283867\/INFOclinical_HN.xlsx?version=2&amp;modificationDate=1504016175776&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Names of GTV contours (XLS)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24283867\/INFO_GTVcontours_HN.xlsx?version=1&amp;modificationDate=1512142013165&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Source Code (web)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/github.com\/mvallieres\/radiomics\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Added 250 total DICOM series to 162 total subjects that had been missing.<\/p><h3 id=\"HeadNeckPETCT-Version1:Updated2017\/11\/30\">Version 1: Updated 2017\/11\/30<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup> <col\/> <col\/> <\/colgroup><tbody><tr><th colspan=\"1\" class=\"confluenceTh\">Data Type<\/th><th colspan=\"1\" class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\"><p>Images (DICOM, 58.1 GB)<\/p><p>NB: 298 of 300 subjects<\/p><\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24283867\/Head-Neck-PET-CT-11-27-2017-doiJNLP-w5LxwxiC.tcia?version=1&amp;modificationDate=1534787033126&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><span class=\"confluence-link\"><br\/><\/span><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Clinical Data (XLS)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24283867\/INFOclinical_HN.xlsx?version=2&amp;modificationDate=1504016175776&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Names of GTV contours (XLS)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24283867\/INFO_GTVcontours_HN.xlsx?version=1&amp;modificationDate=1512142013165&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Source Code (web)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/github.com\/mvallieres\/radiomics\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><\/div>\n<\/div>\n<div class=\"cell aside\" data-type=\"aside\">\n<div class=\"innerCell\">\n<p><br\/><\/p><\/div>\n<\/div>\n<\/div>\n<\/div>","versions":false,"additional_resources":"The following external resources have been made available by the data submitters.\u00a0 These are not hosted or supported by TCIA, but may be useful to researchers utilizing this collection.\n<ul><li><a href=\"https:\/\/github.com\/mvallieres\/radiomics\">Source Code<\/a><\/li><\/ul>","cancer_locations":["Head-Neck"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"","collection_status":"Complete","publications_using":"TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a> which leverage TCIA data. If you have a manuscript you'd like to add please <a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact TCIA's Helpdesk<\/a>.","species":["Human"],"collection_title":"Head-Neck-PET-CT","detailed_description":"<br\/>\n<em>radiomics<\/em>\n<br\/>\n<ul><li> <strong>Clinical Data<\/strong>\u00a0\u2013\u00a0This spreadsheet includes patient information, histopathological type, tumour grade, outcome follow-up information (metastases, survival), etc. <br\/><\/li><li> <strong>Names of GTV contours<\/strong> -- This spreadsheet contains all the names of the \"GTV primary\" and \"GTV lymph nodes\" structures (as found in the associated RTstruct files) used in the publication of (Valli\u00e8res <em>et al.<\/em>, <em>Sci Rep<\/em> <strong>7<\/strong>, 2017). Names of different structures are separated by commas in a given entry of the spreadsheet.<br\/><\/li><\/ul>\n<ul><li><strong>Source Code<\/strong>\u00a0\u2013\u00a0All software code implemented in this work is freely shared under the GNU General Public License at:<a href=\"https:\/\/github.com\/mvallieres\/radiomics\">https:\/\/github.com\/mvallieres\/radiomics<\/a>.<\/li><\/ul>\n<strong>Note:<\/strong>  \u00a0the images contain no private-vendor DICOM tags.","related_analysis_results":false,"subjects":"298","collection_short_title":"Head-Neck-PET-CT","data_types":["PT","CT","RTSTRUCT","RTPLAN","RTDOSE"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":["Clinical","Image Analyses"],"collection_featured_image":false,"collection_summary":"This collection contains FDG-PET\/CT and radiotherapy planning CT imaging data of\u00a0298 \u00a0patients from four different institutions in Qu\u00e9bec with histologically proven head-and-neck cancer (H&amp;N) All patients had pre-treatment FDG-PET\/CT scans between April 2006 and November 2014, and within a median of 18 days (range: 6-66) before treatment. Dates in the TCIA images have been changed in the interest of de-identification; the same change was applied across all images, preserving the time intervals between serial scans.\u00a0\u00a0These patients were all part of a study described in further detail\u00a0 (treatment, image scanning protocols, etc.) \u00a0in the publication: \nPublication Citation<div>Valli\u00e8res, M. <em>et al.<\/em> Radiomics strategies for risk assessment of tumour failure in head-and-neck cancer.<em> Sci Rep<\/em> <strong>7,<\/strong> 10117 (2017). doi:  <a href=\"http:\/\/dx.doi.org\/10.1038\/s41598-017-10371-5\">10.1038\/s41598-017-10371-5<\/a><\/div>\n<strong> <u>Note:<\/u> <\/strong>  \u00a0<em>Subsequent to publishing this manuscript\u00a0it was discovered images from\u00a0<\/em> <em>two patients included in the analysis\u00a0had errors and should not be used in future studies.\u00a0 Therefore these have not been included\u00a0in this TCIA data set, leaving 298 patients of the original 300 analyzed.<\/em> \nIn the original study,\u00a093 of the 300 patients (31 %), the radiotherapy contours were directly drawn on the CT of the FDG-PET\/CT scan by expert radiation oncologists and thereafter used for treatment planning. For 207 of the 300 patients (69 %), the radiotherapy contours were drawn on a different CT scan dedicated to treatment planning and were propagated\/resampled to the FDG-PET\/CT scan reference frame using intensity-based free-form deformable registration with the software MIM<sup>\u00ae<\/sup>\u00a0(MIM software Inc., Cleveland, OH).<br\/> <br\/>Patients with recurrent H&amp;N cancer or with metastases at presentation, and patients receiving palliative treatment were excluded from the study. From the 300 patients, 48 received radiation alone (16 %) and 252 received chemo-radiation (84 %) with curative intent as part of treatment management. The median follow-up period of all patients was 43 months (range: 6-112). Patients that did not develop a locoregional recurrence or distant metastases during the follow-up period and that had a follow-up time smaller than 24 months were also excluded from the study. During the follow-up period, 45 patients developed a locoregional recurrence (15 %), 40 patients developed distant metastases (13 %) and 56 patients died (19 %).\u00a0\u00a0\nWe analyzed the FDG-PET and CT images of the 300 patients from four different cohorts for the risk assessment of locoregional recurrences (LR) and distant metastases in H&amp;N cancer. Prediction models combining radiomic and clinical variables were constructed via random forests and imbalance-adjustment strategies using two of the four cohorts. Independent validation of the prediction and prognostic performance of the models was carried out on the other two cohorts (LR: AUC = 0.69 and CI = 0.67; DM: AUC = 0.86 and CI = 0.88). Furthermore, the results obtained via Kaplan-Meier analysis demonstrated the potential of radiomics for assessing the risk of specific tumour outcomes using multiple stratification groups.\nPlease contact <a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact the TCIA Helpdesk<\/a>\u00a0for scientific or other inquiries about this dataset.","collection_acknowledgements":"We would like to acknowledge the individuals and institutions that have provided data for this collection:\n<ul><li><strong> McGill University, Montreal, Canada\u00a0-\u00a0<\/strong>Special thanks to<strong>\u00a0Martin Valli\u00e8res\u00a0<\/strong>of\u00a0the Medical Physics Unit<\/li><\/ul>\n<br\/>","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5604"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5604"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5604"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}