{"id":5585,"date":"2023-09-04T03:10:26","date_gmt":"2023-09-04T03:10:26","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/cc-radiomics-phantom-3\/"},"modified":"2023-09-13T11:58:31","modified_gmt":"2023-09-13T11:58:31","slug":"cc-radiomics-phantom-3","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/cc-radiomics-phantom-3\/","title":{"rendered":"CC-RADIOMICS-PHANTOM-3"},"featured_media":0,"template":"","citation-tax":[],"cancer_types":["Phantom"],"citations":[4449,2925],"collection_doi":"10.7937\/tcia.2019.j71i4fah","collection_download_info":"Click the Versions tab for more info about data releases.","collection_downloads":[4998,4999],"full_export":"<div class=\"contentLayout2\">\n<div class=\"columnLayout two-right-sidebar\" data-layout=\"two-right-sidebar\">\n<div class=\"cell normal\" data-type=\"normal\">\n<div class=\"innerCell\">\n<h2 id=\"CTPhantomScansforHead,Chest,andControlledProtocolson100Scanners(CCRadiomicsPhantom3)-Summary\">Summary<\/h2><p><span style=\"color: rgb(51,51,51);text-decoration: none;\">There currently is a dearth of phantom scans on large samples.<\/span>\u00a0This data collection contains one physical phantom, imaged across three protocols, on 100 scanners. This provides population data that can be used to quantify inter-scanner variability. This data can be used to determine how robust specific radiomics or other quantitative imaging signatures are.<\/p><h3 id=\"CTPhantomScansforHead,Chest,andControlledProtocolson100Scanners(CCRadiomicsPhantom3)-Protocol\">Protocol<\/h3><p>Computed tomography scans were acquired on 100 scanners at 35 clinics: 51 GE scanners, 20 Philips scanners, 11 Toshiba scanners, and 1 Philips and Neusoft Medical System scanner. The commonly used chest and head protocols of the local clinic were acquired without changing the protocol parameters. Additionally, a controlled protocol was acquired that was designed to minimize radiomics feature differences between manufacturers. The settings for the controlled protocol were: tube voltage, 120 kV(p); tube current, 200 mA\u2219s; helical scan type; spiral pitch factor, 1.0; 50-cm display field of view; and image thickness, 3 mm (except for GE scanners, which used an image thickness of 2.5 mm). The convolution kernel was standard for GE; C for Philips; B31f, B31s for Siemens; and FC08 for Toshiba. However, the kernel used for the Toshiba scans switched from FC18 (six scanners) to FC08 (five scanners) halfway through owing to a study by Mackin et al. (Medical Physics, 2018) that found the FC08 kernel to match the GE standard kernel best. K-means clustering showed that the scanners did not cluster by kernel type, thus all Toshiba scanners were included.<\/p><p>There were 94 scanners that had a controlled protocol scan that could be used: 48 GE, 18 Philips, 17 Siemens, and 11 Toshiba scanners; 93 scanners that had a local chest protocol scan that could be used: 47 GE, 19 Philips, 17 Siemens, and 10 Toshiba scanners; and 88 scanners that had a local head protocol scan that could be used: 46 GE, 18 Philips, 14 Siemens, and 10 Toshiba scanners. The various reasons that scans could not be used were as follows: the field of view did not encompass all the cartridges, the scan extent did not cover the length of the phantom, and the scan was acquired with variable image thickness.<\/p><h3 id=\"CTPhantomScansforHead,Chest,andControlledProtocolson100Scanners(CCRadiomicsPhantom3)-Acknowledgements\">Acknowledgements<\/h3><p>This data set was provided to TCIA by <span>Rachel Ger, Shouhao Zhou, Pai-Chun Chi, Hannah Lee, Rick Layman, Kyle Jones, David Goff, Carlos Cardenas, Clifton Fuller, Rebecca Howell, Heng Li, Jason Stafford, Laurence Court, Dennis Mackin.<\/span><\/p><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#46334020f5db10ad192b437eb79a0392d11ed1a0\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#46334020f6cfd95910294c009f2f8be397bc398b\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#4633402060d875ddbcc54bc3ab4da88ca8c0ac81\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#463340200eb890a8c6904d60bfa9ca0edea3d05b\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"46334020f5db10ad192b437eb79a0392d11ed1a0\" active=\"true\" name=\"Data Access\" ><h3 id=\"CTPhantomScansforHead,Chest,andControlledProtocolson100Scanners(CCRadiomicsPhantom3)-DataAccess\">Data Access<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 98.893%;\"><colgroup><col style=\"width: 64.771%;\"\/><col style=\"width: 27.8153%;\"\/><col style=\"width: 7.40327%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Images a<span style=\"color: rgb(38,44,49);\">nd Radiation Therapy Structures<\/span> (DICOM, 13.4GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/46334020\/CC-Radiomics-Phantom-3-NBIA-manifest.tcia?version=1&amp;modificationDate=1563986884466&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=CC-Radiomics-Phantom-3\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><\/p><\/div><p class=\"auto-cursor-target\">C<span>lick the\u00a0<\/span><strong>Download<\/strong><span> button\u00a0to save a &quot;.tcia&quot; manifest file to your computer, which you must open with the <\/span><a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a><span>.\u00a0<\/span><\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Acquisition &amp; reconstruction settings<\/p><p>(note: Acquisition and reconstruction settings within the DICOM header may be incorrect. The settings used for each scan are provided in the attached spreadsheet.<\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/46334020\/TCIA_CCR_Parameters_Anonymized.xlsx?version=1&amp;modificationDate=1556115106104&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><\/div><div class=\"tabs-pane \" id=\"46334020f6cfd95910294c009f2f8be397bc398b\" name=\"Detailed Description\" ><h3 id=\"CTPhantomScansforHead,Chest,andControlledProtocolson100Scanners(CCRadiomicsPhantom3)-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p>Collection Statistics<\/p><\/div><\/th><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p>Radiology Imaging Statistics<\/p><\/div><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p><span style=\"color: rgb(51,51,51);\">CT, RTSTRUCT<\/span><\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Patients<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>95<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>113<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p>550<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\"><p><span style=\"color: rgb(51,51,51);\">25,612<\/span><\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Image Size (GB)<\/td><td style=\"text-align: center;\" colspan=\"1\" class=\"confluenceTd\">13.4<\/td><\/tr><\/tbody><\/table><\/div><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"4633402060d875ddbcc54bc3ab4da88ca8c0ac81\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"CTPhantomScansforHead,Chest,andControlledProtocolson100Scanners(CCRadiomicsPhantom3)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy\u00a0<\/h3><p>\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(0,0,0);text-decoration: none;\"><span style=\"color: rgb(51,51,51);text-decoration: none;\">Ger R, Zhou S, Chi P-C, Lee H, Layman R, Jones K,\u00a0Goff DL, Fuller CD, Howell RM, Heng L, Stafford RJ, Court LE, Mackin D. (2019). <strong>Data from CT Phantom Scans for Head, Chest, and Controlled Protocols on 100 Scanners (CC-Radiomics-Phantom-3)<\/strong> [Data set]. The Cancer Imaging Archive. <a href=\"https:\/\/doi.org\/10.7937\/tcia.2019.j71i4fah\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/tcia.2019.j71i4fah<\/a><\/span><\/span><span style=\"color: rgb(0,0,0);text-decoration: none;\"><br\/><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Manuscript Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(0,0,0);text-decoration: none;\">Ger, Rachel B.; Zhou, Shouhao; Chi, Pai-Chun Melinda; Lee, Hannah J.; Layman, Rick R.; Jones, A. Kyle; Goff, David L.; Fuller, Clifton D.; Howell, Rebecca M.; Li, Heng; Stafford, R. Jason; Court, Laurence E.; Mackin, Dennis S. (2018) <strong>Comprehensive Investigation on Controlling for CT Imaging Variabilities in Radiomics Studies<\/strong>. Scientific Reports 8:13047. DOI:\u00a0<a href=\"https:\/\/doi.org\/10.1038\/s41598-018-31509-z\" class=\"external-link\" rel=\"nofollow\">10.1038\/s41598-018-31509-z<\/a><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F.\u00a0<strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057.\u00a0DOI: <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">10.1007\/s10278-013-9622-7<\/a><\/p><\/div><\/div><h3 id=\"CTPhantomScansforHead,Chest,andControlledProtocolson100Scanners(CCRadiomicsPhantom3)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\">a list of publications<\/a>\u00a0which leverage our data.\u00a0<\/span>If you have a publication you'd like to add please <a class=\"external-link\" style=\"text-decoration: underline;\" rel=\"nofollow\" href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact TCIA's Helpdesk<\/a>.\u00a0<\/p><\/div><div class=\"tabs-pane \" id=\"463340200eb890a8c6904d60bfa9ca0edea3d05b\" name=\"Versions\" ><h3 id=\"CTPhantomScansforHead,Chest,andControlledProtocolson100Scanners(CCRadiomicsPhantom3)-Version1(Current):Updated2019\/05\/08\">Version 1 (Current): Updated 2019\/05\/08<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 59.4852%;\"><colgroup><col style=\"width: 52.1066%;\"\/><col style=\"width: 47.9008%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td class=\"confluenceTd\">Images (DICOM, 13.4 GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/46334020\/CC-Radiomics-Phantom-3-NBIA-manifest.tcia?version=1&amp;modificationDate=1563986884466&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p><span class=\"confluence-link\">(Requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>.)<br\/><\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Acquisition &amp; reconstruction settings (XLSX, 29kB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/46334020\/TCIA_CCR_Parameters_Anonymized.xlsx?version=1&amp;modificationDate=1556115106104&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><\/div>\n<\/div>\n<div class=\"cell aside\" data-type=\"aside\">\n<div class=\"innerCell\">\n<p><span class=\"confluence-embedded-file-wrapper\"><img class=\"confluence-embedded-image\" draggable=\"false\" alt=\"41598_2018_31509_Fig1\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/Public\/CT%20Phantom%20Scans%20for%20Head,%20Chest,%20and%20Controlled%20Protocols%20on%20100%20Scanners%20(CC-Radiomics-Phantom-3)\/41598_2018_31509_Fig1.png?api=v2\"><\/span><\/p><p>Axial views from a computed tomography scan of the radiomics phantom used. The cartridges are (a) 50% acrylonitrile butadiene styrene (ABS), 25% acrylic beads, and 25% polyvinyl chloride (PVC) pieces (percentages are by weight), (b) 50% ABS and 50% PVC pieces, (c) 50% ABS and 50% acrylic beads, (d) hemp seeds in polyurethane, (e) shredded rubber, and (f) dense cork. <br\/>The high-density polystyrene buildup is seen outside the cartridges with dimensions of 28cm\u00d721cm\u00d722cm. The cartridges had a diameter of 10.8 cm. Window width: 1600, window level: -300.<\/p><\/div>\n<\/div>\n<\/div>\n<\/div>","versions":false,"additional_resources":"","cancer_locations":["Head &amp; Chest Phantom"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"","collection_status":"Complete","publications_using":"TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a>\u00a0which leverage our data.\u00a0If you have a publication you'd like to add please <a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact TCIA's Helpdesk<\/a>.","species":["Human"],"collection_title":"CT Phantom Scans for Head, Chest, and Controlled Protocols on 100 Scanners","detailed_description":"<br\/>","related_analysis_results":false,"subjects":"95","collection_short_title":"CC-Radiomics-Phantom-3","data_types":["RTSTRUCT","CT"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":["Image Analyses"],"collection_featured_image":false,"collection_summary":"There currently is a dearth of phantom scans on large samples.\u00a0This data collection contains one physical phantom, imaged across three protocols, on 100 scanners. This provides population data that can be used to quantify inter-scanner variability. This data can be used to determine how robust specific radiomics or other quantitative imaging signatures are.\n<h3>Protocol<\/h3>\nComputed tomography scans were acquired on 100 scanners at 35 clinics: 51 GE scanners, 20 Philips scanners, 11 Toshiba scanners, and 1 Philips and Neusoft Medical System scanner. The commonly used chest and head protocols of the local clinic were acquired without changing the protocol parameters. Additionally, a controlled protocol was acquired that was designed to minimize radiomics feature differences between manufacturers. The settings for the controlled protocol were: tube voltage, 120 kV(p); tube current, 200 mA\u2219s; helical scan type; spiral pitch factor, 1.0; 50-cm display field of view; and image thickness, 3 mm (except for GE scanners, which used an image thickness of 2.5 mm). The convolution kernel was standard for GE; C for Philips; B31f, B31s for Siemens; and FC08 for Toshiba. However, the kernel used for the Toshiba scans switched from FC18 (six scanners) to FC08 (five scanners) halfway through owing to a study by Mackin et al. (Medical Physics, 2018) that found the FC08 kernel to match the GE standard kernel best. K-means clustering showed that the scanners did not cluster by kernel type, thus all Toshiba scanners were included.\nThere were 94 scanners that had a controlled protocol scan that could be used: 48 GE, 18 Philips, 17 Siemens, and 11 Toshiba scanners; 93 scanners that had a local chest protocol scan that could be used: 47 GE, 19 Philips, 17 Siemens, and 10 Toshiba scanners; and 88 scanners that had a local head protocol scan that could be used: 46 GE, 18 Philips, 14 Siemens, and 10 Toshiba scanners. The various reasons that scans could not be used were as follows: the field of view did not encompass all the cartridges, the scan extent did not cover the length of the phantom, and the scan was acquired with variable image thickness.","collection_acknowledgements":"This data set was provided to TCIA by Rachel Ger, Shouhao Zhou, Pai-Chun Chi, Hannah Lee, Rick Layman, Kyle Jones, David Goff, Carlos Cardenas, Clifton Fuller, Rebecca Howell, Heng Li, Jason Stafford, Laurence Court, Dennis Mackin.\n<br\/>","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5585"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5585"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5585"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}