{"id":5583,"date":"2023-09-04T03:10:17","date_gmt":"2023-09-04T03:10:17","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/acrin-6664\/"},"modified":"2023-09-13T11:58:25","modified_gmt":"2023-09-13T11:58:25","slug":"acrin-6664","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/acrin-6664\/","title":{"rendered":"ACRIN-6664"},"featured_media":0,"template":"","citation-tax":[],"cancer_types":["Colon Cancer"],"citations":[4444,4445,2925],"collection_doi":"10.7937\/K9\/TCIA.2015.NWTESAY1","collection_download_info":"Click the Versions tab for more info about data releases.","collection_downloads":[4991,4992,4993,4994,4995],"full_export":"<div class=\"wiki-content\"><h2 id=\"CTCOLONOGRAPHY(ACRIN6664)-Summary\">Summary<\/h2><p>The National CT Colonography Trial (ACRIN 6664) collection contains 825 cases of CT colonography imaging with accompanying spreadsheets that provide polyp descriptions and their location within the colon segments.\u00a0 Additional information about the trial is available in the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/ACRIN%206664_protocol.pdf?version=1&amp;modificationDate=1676650799314&amp;api=v2\" data-linked-resource-id=\"145753906\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"ACRIN 6664_protocol.pdf\" data-nice-type=\"PDF Document\" data-linked-resource-content-type=\"application\/pdf\" data-linked-resource-container-id=\"3539213\" data-linked-resource-container-version=\"62\">Study Protocol<\/a> and <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/ACRIN%206664_CRF%20Set.pdf?version=1&amp;modificationDate=1676650831817&amp;api=v2\" data-linked-resource-id=\"145753907\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"ACRIN 6664_CRF Set.pdf\" data-nice-type=\"PDF Document\" data-linked-resource-content-type=\"application\/pdf\" data-linked-resource-container-id=\"3539213\" data-linked-resource-container-version=\"62\">Case Report Forms<\/a>.<\/p><p><strong>Main Objective:<\/strong><span>\u00a0<\/span>To clinically validate widespread use of computerized tomographic colonography (CTC) in a screening population for the detection of colorectal neoplasia.<\/p><p><strong>Participants:<\/strong>\u00a0Male and female outpatients, aged 50 years or older, scheduled\u00a0for screening colonoscopy, who have not had a colonoscopy in the past five years.<\/p><p><strong>Study Design Summary:<\/strong><span>\u00a0<\/span>The study addresses aspects of central importance to the clinical application of CTC in several interrelated but independent parts that will be conducted in parallel. In Part I, the clinical performance of the CTC examination will be prospectively compared in a blinded fashion to colonoscopy. In Part II, optimization of the CT technique will be performed in view of new technological advances in CT technology. In Part III, lesion detection will be\u00a0optimized by studying the morphologic features of critical lesion types and in\u00a0the development of a database for computer-assisted diagnosis. In Part IV,\u00a0patient preferences and cost-effectiveness implications of observed performance\u00a0outcomes will be evaluated using a predictive model.<\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#3539213704d4e4b6b964c2d9a3e3d66d6b3bb09\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#353921356f20bb5d9cb43f99cedf51089d03873\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#35392130b1fbb957f8b4d74acf96417fcdf53fd\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#35392138fe2039671d04e6298c5da8e7f73ae41\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"3539213704d4e4b6b964c2d9a3e3d66d6b3bb09\" active=\"true\" name=\"Data Access\" ><h3 id=\"CTCOLONOGRAPHY(ACRIN6664)-DataAccess\">Data Access<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 92.1018%;\"><colgroup><col style=\"width: 17.9467%;\"\/><col style=\"width: 52.3822%;\"\/><col style=\"width: 29.6056%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Images (DICOM, 462.6GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/TCIA_CT_COLONOGRAPHY_06-22-2015.tcia?version=1&amp;modificationDate=1534787407262&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/www.cancerimagingarchive.net\/nbia-search\/?CollectionCriteria=CT%20COLONOGRAPHY\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p>(<strong>Download<\/strong> requires the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a> )<\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">DICOM Metadata Digest (CSV)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/CTColonography_MetaData.csv?version=1&amp;modificationDate=1495563713054&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Polyp Descriptions - Large 10mm (XLS)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/TCIA%20CTC%20large%2010%20mm%20polyps.xls?version=1&amp;modificationDate=1319827873218&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Polyp Descriptions - 6 to 9mm (XLS)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/TCIA%20CTC%206%20to%209%20mm%20polyps.xls?version=1&amp;modificationDate=1319827873202&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Polyp Descriptions - No polyp found (XLS)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/TCIA%20CTC%20no%20polyp%20found.xls?version=1&amp;modificationDate=1319827873229&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><p>\n<h3 id=\"CTCOLONOGRAPHY(ACRIN6664)-AdditionalResourcesforthisDataset\">Additional Resources for this Dataset<\/h3>\n<p>The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.<\/p><\/p><ul><li class=\"auto-cursor-target\"><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=ct_colonography\" class=\"external-link\" rel=\"nofollow\">Imaging Data Commons (IDC)<\/a> (Imaging Data)<\/li><\/ul><h3 id=\"CTCOLONOGRAPHY(ACRIN6664)-ThirdPartyAnalysesofthisDataset\">Third Party Analyses of this Dataset<\/h3><p>TCIA encourages the community to <a href=\"http:\/\/www.cancerimagingarchive.net\/analysis-results\/\" class=\"external-link\" rel=\"nofollow\">publish your analyses of our datasets<\/a>. Below is a list of such third party analyses published using this Collection:<\/p><ul><li><a href=\"https:\/\/wiki.cancerimagingarchive.net\/pages\/viewpage.action?pageId=22518423\">Image Data Used in the Simulations of &quot;The Role of Image Compression Standards in Medical Imaging: Current Status and Future Trends&quot;<\/a><\/li><\/ul><\/div><div class=\"tabs-pane \" id=\"353921356f20bb5d9cb43f99cedf51089d03873\" name=\"Detailed Description\" ><h3 id=\"CTCOLONOGRAPHY(ACRIN6664)-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><tbody><tr><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p>Collection Statistics<\/p><\/div><\/th><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p><br\/><\/p><\/div><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td class=\"confluenceTd\"><p>CT<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Participants<\/p><\/td><td class=\"confluenceTd\"><p>825<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td class=\"confluenceTd\"><p>836<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td class=\"confluenceTd\"><p>3,451<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\"><p>941,771<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Image Size (GB)<\/td><td colspan=\"1\" class=\"confluenceTd\">462.6<\/td><\/tr><\/tbody><\/table><\/div><p>There are presently 825 cases in this collection with XLS sheets that provide polyp descriptions and their location within the colon segments.\u00a0 To link the XLS polyp tables with the DICOM image studies in TCIA you should understand that some cases in the TCIA are identified by long numbers with the last 4 digits after the last decimal point (e.g.: NCIA study number &quot;1.3.6.1.4.1.9328.50.4.0040&quot; referred to as case &quot;40&quot;). In addition there are a fewer number of additional positive cases that begin their identification number with 'CTC' (e.g.: CTC-5401799343)<\/p><p>Three related XLS spreadsheets are in this release.\u00a0<\/p><ol><li><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/TCIA%20CTC%20large%2010%20mm%20polyps.xls?version=1&amp;modificationDate=1319827873218&amp;api=v2\" rel=\"nofollow\">TCIA CTC large 10 mm polyps.xls<\/a>\u00a0- Contains the case numbers for 35 cases (out of the 825 total TCIA cases) where at least one 10mm or larger size polyp was found.\u00a0 Individual cases may have several (up to 20) polyps of different sizes listed on a particular XLS row as &quot;LESION 1.x, 2.x,3.x etc. \u2013 see &quot;feature key&quot; below).<\/li><li><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/TCIA%20CTC%206%20to%209%20mm%20polyps.xls?version=1&amp;modificationDate=1319827873202&amp;api=v2\" rel=\"nofollow\">TCIA CTC 6 to 9 mm polyps.xls<\/a>\u00a0- Contains 69 cases with smaller size polyps.<\/li><li><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/TCIA%20CTC%20no%20polyp%20found.xls?version=1&amp;modificationDate=1319827873229&amp;api=v2\" rel=\"nofollow\">TCIA CTC no polyp found.xls<\/a>\u00a0- Contains 243 cases that were recorded as free of polyps by both CTC and optical techniques.<\/li><\/ol><p>Thus in this CT Colonography collection you will be able to download the prone and supine DICOM images from OC same-day validated 243 negative cases, 69 cases with 6 to 9 mm polyps, and 35 cases which have at least one &gt; 10 mm polyp and their histological type. Below is the key for deciphering the features in the spreadsheet.<\/p><p><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-external-resource confluence-content-image-border\" draggable=\"false\" height=\"373\" width=\"502\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/Polyp%20description%20key%20table.PNG?version=1&amp;modificationDate=1319827167685&amp;api=v2\" data-image-src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/Polyp%20description%20key%20table.PNG?version=1&amp;modificationDate=1319827167685&amp;api=v2\"><\/span><\/p><p><strong> <em>WARNING: NCI cannot assure archive users of error-free validity of the XL polyp location data since NCI did not itself perform the clinical study or its analysis.<\/em> <\/strong><\/p><p>You will note that two XLS files with positive findings have multiple columns descriptors of individual polyp lesions listed as in the table below.\u00a0 The meaning of the colored columns labeled &quot;LESION 1.1...1.2...1.3...1.4, etc&quot; is explained in the attached key-code &quot;.tiff&quot; file entitled &quot;Polyp description key table.tiff&quot;). Some CT scan slice numbers where the polyps were found are provided, but unfortunately the table may not have complete slice number information \u2013 you'll just have to do the best you can with the data NCI was given.<\/p><p><span class=\"confluence-embedded-file-wrapper\"><img class=\"confluence-embedded-image confluence-external-resource confluence-content-image-border\" draggable=\"false\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/column-colors.PNG?version=1&amp;modificationDate=1319827131789&amp;api=v2\" data-image-src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/column-colors.PNG?version=1&amp;modificationDate=1319827131789&amp;api=v2\"><\/span><\/p><p><br\/><\/p><p><strong>A note about the values in DICOM header <span style=\"color: rgb(39,39,39);\">(0010,1010) <\/span>Patient Age<\/strong>: Within the CT COLONOGRAPHY collection, there are some ages that were anonymized to 105Y and 110Y which does not follow the standard TCIA de-identification procedure regarding ages 89 and older. TCIA policy is to bin any age over 89 into a common age group &quot;090Y&quot;. Although these ages are not binned to 090Y, please be aware that they are not actual ages of patients.<\/p><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"35392130b1fbb957f8b4d74acf96417fcdf53fd\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"CTCOLONOGRAPHY(ACRIN6664)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy\u00a0<\/h3><p class=\"auto-cursor-target\">\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(0,0,0);\">Smith K, Clark K, Bennett W, Nolan T, Kirby J, Wolfsberger M, Moulton J, Vendt B, Freymann J. (2015). <strong>Data From CT COLONOGRAPHY<\/strong>. The Cancer Imaging Archive<\/span>. <a href=\"https:\/\/doi.org\/10.7937\/K9\/TCIA.2015.NWTESAY1\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/K9\/TCIA.2015.NWTESAY1<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(102,102,102);\"> <span style=\"color: rgb(0,0,0);\">Johnson, C. D., Chen, M.-H., Toledano, A. Y., Heiken, J. P., Dachman, A., Kuo, M. D., \u2026 Limburg, P. J. (2008, September 18). <strong>Accuracy of CT Colonography for Detection of Large Adenomas and Cancers. <\/strong>New England Journal of Medicine. New England Journal of Medicine (NEJM\/MMS).<\/span> <a href=\"https:\/\/doi.org\/10.1056\/nejmoa0800996\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1056\/nejmoa0800996<\/a> <\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F.\u00a0<strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/a><\/p><\/div><\/div><h3 id=\"CTCOLONOGRAPHY(ACRIN6664)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p>TCIA maintains a list of publications which leverage these datasets. \u00a0If you have a <span>publication <\/span>you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\"> contact the TCIA Helpdesk<\/a>.\u00a0<\/p><ol><li>Shakir, Hina; Deng, Yiming; Rasheed, Haroon; Khan, Tariq Mairaj Rasool. <strong>Radiomics based likelihood functions for cancer diagnosis. <\/strong>Sci Rep 2019 <a href=\"https:\/\/www.nature.com\/articles\/s41598-019-45053-x\" class=\"external-link\" rel=\"nofollow\">link<\/a><\/li><li>Gayathri, Devi K; Radhakrishnan, R; Rajamani, Kumar. <strong>Segmentation of colon and removal of opacified fluid for virtual colonoscopy. <\/strong>Pattern Analysis and Applications 2017 <a href=\"https:\/\/link.springer.com\/article\/10.1007\/s10044-017-0614-y\" class=\"external-link\" rel=\"nofollow\">link<\/a><\/li><li>Lin, Anthony Y; Du, Peng; Dinning, Philip G; Arkwright, John W; Kamp, Jozef P; Cheng, Leo K; Bissett, Ian P; O'Grady, Gregory. <strong>High-resolution anatomic correlation of cyclic motor patterns in the human colon: Evidence of a rectosigmoid brake. <\/strong>American Journal of Physiology-Gastrointestinal and Liver Physiology 2017 <a href=\"https:\/\/www.physiology.org\/doi\/abs\/10.1152\/ajpgi.00021.2017\" class=\"external-link\" rel=\"nofollow\">link<\/a><\/li><li>Manjunath, KN; Siddalingaswamy, PC; Prabhu, GK. <strong>Measurement of smaller colon polyp in CT colonography images using morphological image processing. <\/strong>International journal of computer assisted radiology and surgery 2017 <a href=\"https:\/\/link.springer.com\/article\/10.1007\/s11548-017-1615-4\" class=\"external-link\" rel=\"nofollow\">link<\/a><\/li><li>Alazmani, A; Hood, A; Jayne, D; Neville, A; Culmer, P. <strong>Quantitative assessment of colorectal morphology: Implications for robotic colonoscopy <\/strong>Medical engineering &amp; physics 2016 <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26762775\" class=\"external-link\" rel=\"nofollow\">link<\/a><\/li><li>Manjunath, KN; Siddalingaswamy, PC; Gopalakrishna Prabhu, K. <strong>An improved method of colon segmentation in computed tomography colonography images using domain knowledge <\/strong>Journal of Medical Imaging and Health Informatics 2016 <a href=\"https:\/\/doi.org\/10.1166\/jmihi.2016.1786\" class=\"external-link\" rel=\"nofollow\">link<\/a><\/li><li>Yahya-Zoubir, Bahia; Hamami, Latifa; Saadaoui, Llies; Ouared, Rafik. <strong>Automatic 3D Mesh-Based Centerline Extraction from a Tubular Geometry Form. <\/strong>Information Technology And Control 2016 <a href=\"http:\/\/www.itc.ktu.lt\/index.php\/ITC\/article\/view\/12162\" class=\"external-link\" rel=\"nofollow\">link<\/a><\/li><li>Gayathri Devi, K; Radhakrishnan, R. <strong>Automatic Segmentation of Colon in 3D CT Images and Removal of Opacified Fluid Using Cascade Feed Forward Neural Network. <\/strong>Computational and Mathematical Methods in Medicine 2015 <a href=\"https:\/\/www.hindawi.com\/journals\/cmmm\/2015\/670739\/abs\/\" class=\"external-link\" rel=\"nofollow\">link<\/a><\/li><li>Manjunath, KN; Siddalingaswamy, PC; Prabhu, GK. <strong>Automatic Electronic Cleansing in Computed Tomography Colonography Images using Domain Knowledge. <\/strong>Asian Pacific Journal of Cancer Prevention 2015 <a href=\"https:\/\/doi.org\/10.7314\/APJCP.2015.16.18.8351\" class=\"external-link\" rel=\"nofollow\">link<\/a><\/li><li>Nam\u00edas, R; D\u2019Amato, JP; Del Fresno, M; V\u00e9nere, M. <strong>Automatic rectum limit detection by anatomical markers correlation <\/strong>Computerized Medical Imaging and Graphics 2014 <a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0895611114000159\" class=\"external-link\" rel=\"nofollow\">link<\/a><\/li><li>Boone, Darren J; Halligan, Steve; Roth, Holger R; Hampshire, Tom E; Helbren, Emma; Slabaugh, Greg G; McQuillan, Justine; McClelland, Jamie R; Hu, Mingxing; Punwani, Shonit. <strong>CT Colonography: External Clinical Validation of an Algorithm for Computer-assisted Prone and Supine Registration. <\/strong>Radiology 2013 <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23687175\" class=\"external-link\" rel=\"nofollow\">link<\/a><\/li><li>Roth, Holger R; Boone, Darren J; Halligan, Steve; Hampshire, Thomas E; McClelland, Jamie R; Hu, Mingxing; Punwani, Shonit; Taylor, Stuart; Hawkes, David J. <strong>External clinical validation of prone and supine CT colonography registration. <\/strong>2012 <a href=\"https:\/\/link.springer.com\/chapter\/10.1007\/978-3-642-33612-6_2\" class=\"external-link\" rel=\"nofollow\">link<\/a><\/li><\/ol><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"35392138fe2039671d04e6298c5da8e7f73ae41\" name=\"Versions\" ><h3 id=\"CTCOLONOGRAPHY(ACRIN6664)-Version1(Current):Updated2013\/11\/15\">Version 1 (Current): Updated 2013\/11\/15<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup> <col\/> <col\/> <\/colgroup><tbody><tr><th colspan=\"1\" class=\"confluenceTh\">Data Type<\/th><th colspan=\"1\" class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images (DICOM, 462.6GB)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/TCIA_CT_COLONOGRAPHY_06-22-2015.tcia?version=1&amp;modificationDate=1534787407262&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/www.cancerimagingarchive.net\/nbia-search\/?CollectionCriteria=CT%20COLONOGRAPHY\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p><span class=\"confluence-link\">(Requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a>.)<br\/><\/span><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">DICOM Metadata Digest (CSV)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/CTColonography_MetaData.csv?version=1&amp;modificationDate=1495563713054&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Polyp Descriptions - Large 10mm (XLS)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/TCIA%20CTC%20large%2010%20mm%20polyps.xls?version=1&amp;modificationDate=1319827873218&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Polyp Descriptions - 6 to 9mm (XLS)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/TCIA%20CTC%206%20to%209%20mm%20polyps.xls?version=1&amp;modificationDate=1319827873202&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Polyp Descriptions - No polyp found (XLS)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/3539213\/TCIA%20CTC%20no%20polyp%20found.xls?version=1&amp;modificationDate=1319827873229&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\"><div class=\"tabs-pane active-pane\"><p><br\/><\/p><\/div><\/div><\/div><\/div><p><br\/><\/p><p><br\/><\/p>","versions":false,"additional_resources":"The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.\n \n<ul><li><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=ct_colonography\">Imaging Data Commons (IDC)<\/a> (Imaging Data)<\/li><\/ul>","cancer_locations":["Colon"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"TCIA encourages the community to <a href=\"http:\/\/www.cancerimagingarchive.net\/analysis-results\/\">publish your analyses of our datasets<\/a>. Below is a list of such third party analyses published using this Collection:\n<ul><li><a href=\"\/pages\/viewpage.action?pageId=22518423\">Image Data Used in the Simulations of \"The Role of Image Compression Standards in Medical Imaging: Current Status and Future Trends\"<\/a><\/li><\/ul>","collection_status":"Complete","publications_using":"TCIA maintains a list of publications which leverage these datasets. \u00a0If you have a publication you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact the TCIA Helpdesk<\/a>.\u00a0\n<ol><li>Shakir, Hina; Deng, Yiming; Rasheed, Haroon; Khan, Tariq Mairaj Rasool. <strong>Radiomics based likelihood functions for cancer diagnosis. <\/strong>Sci Rep 2019 <a href=\"https:\/\/www.nature.com\/articles\/s41598-019-45053-x\">link<\/a><\/li><li>Gayathri, Devi K; Radhakrishnan, R; Rajamani, Kumar. <strong>Segmentation of colon and removal of opacified fluid for virtual colonoscopy. <\/strong>Pattern Analysis and Applications 2017 <a href=\"https:\/\/link.springer.com\/article\/10.1007\/s10044-017-0614-y\">link<\/a><\/li><li>Lin, Anthony Y; Du, Peng; Dinning, Philip G; Arkwright, John W; Kamp, Jozef P; Cheng, Leo K; Bissett, Ian P; O'Grady, Gregory. <strong>High-resolution anatomic correlation of cyclic motor patterns in the human colon: Evidence of a rectosigmoid brake. <\/strong>American Journal of Physiology-Gastrointestinal and Liver Physiology 2017 <a href=\"https:\/\/www.physiology.org\/doi\/abs\/10.1152\/ajpgi.00021.2017\">link<\/a><\/li><li>Manjunath, KN; Siddalingaswamy, PC; Prabhu, GK. <strong>Measurement of smaller colon polyp in CT colonography images using morphological image processing. <\/strong>International journal of computer assisted radiology and surgery 2017 <a href=\"https:\/\/link.springer.com\/article\/10.1007\/s11548-017-1615-4\">link<\/a><\/li><li>Alazmani, A; Hood, A; Jayne, D; Neville, A; Culmer, P. <strong>Quantitative assessment of colorectal morphology: Implications for robotic colonoscopy <\/strong>Medical engineering &amp; physics 2016 <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26762775\">link<\/a><\/li><li>Manjunath, KN; Siddalingaswamy, PC; Gopalakrishna Prabhu, K. <strong>An improved method of colon segmentation in computed tomography colonography images using domain knowledge <\/strong>Journal of Medical Imaging and Health Informatics 2016 <a href=\"https:\/\/doi.org\/10.1166\/jmihi.2016.1786\">link<\/a><\/li><li>Yahya-Zoubir, Bahia; Hamami, Latifa; Saadaoui, Llies; Ouared, Rafik. <strong>Automatic 3D Mesh-Based Centerline Extraction from a Tubular Geometry Form. <\/strong>Information Technology And Control 2016 <a href=\"http:\/\/www.itc.ktu.lt\/index.php\/ITC\/article\/view\/12162\">link<\/a><\/li><li>Gayathri Devi, K; Radhakrishnan, R. <strong>Automatic Segmentation of Colon in 3D CT Images and Removal of Opacified Fluid Using Cascade Feed Forward Neural Network. <\/strong>Computational and Mathematical Methods in Medicine 2015 <a href=\"https:\/\/www.hindawi.com\/journals\/cmmm\/2015\/670739\/abs\/\">link<\/a><\/li><li>Manjunath, KN; Siddalingaswamy, PC; Prabhu, GK. <strong>Automatic Electronic Cleansing in Computed Tomography Colonography Images using Domain Knowledge. <\/strong>Asian Pacific Journal of Cancer Prevention 2015 <a href=\"https:\/\/doi.org\/10.7314\/APJCP.2015.16.18.8351\">link<\/a><\/li><li>Nam\u00edas, R; D\u2019Amato, JP; Del Fresno, M; V\u00e9nere, M. <strong>Automatic rectum limit detection by anatomical markers correlation <\/strong>Computerized Medical Imaging and Graphics 2014 <a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0895611114000159\">link<\/a><\/li><li>Boone, Darren J; Halligan, Steve; Roth, Holger R; Hampshire, Tom E; Helbren, Emma; Slabaugh, Greg G; McQuillan, Justine; McClelland, Jamie R; Hu, Mingxing; Punwani, Shonit. <strong>CT Colonography: External Clinical Validation of an Algorithm for Computer-assisted Prone and Supine Registration. <\/strong>Radiology 2013 <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23687175\">link<\/a><\/li><li>Roth, Holger R; Boone, Darren J; Halligan, Steve; Hampshire, Thomas E; McClelland, Jamie R; Hu, Mingxing; Punwani, Shonit; Taylor, Stuart; Hawkes, David J. <strong>External clinical validation of prone and supine CT colonography registration. <\/strong>2012 <a href=\"https:\/\/link.springer.com\/chapter\/10.1007\/978-3-642-33612-6_2\">link<\/a><\/li><\/ol>\n<br\/>","species":["Human"],"collection_title":"CT COLONOGRAPHY","detailed_description":"There are presently 825 cases in this collection with XLS sheets that provide polyp descriptions and their location within the colon segments.\u00a0 To link the XLS polyp tables with the DICOM image studies in TCIA you should understand that some cases in the TCIA are identified by long numbers with the last 4 digits after the last decimal point (e.g.: NCIA study number \"1.3.6.1.4.1.9328.50.4.0040\" referred to as case \"40\"). In addition there are a fewer number of additional positive cases that begin their identification number with 'CTC' (e.g.: CTC-5401799343)\nThree related XLS spreadsheets are in this release.\u00a0\n<ol><li><a download=\"\" href=\"\/wp-content\/uploads\/TCIA-CTC-large-10-mm-polyps.xls\" target=\"_blank\">TCIA CTC large 10 mm polyps.xls<\/a>\u00a0- Contains the case numbers for 35 cases (out of the 825 total TCIA cases) where at least one 10mm or larger size polyp was found.\u00a0 Individual cases may have several (up to 20) polyps of different sizes listed on a particular XLS row as \"LESION 1.x, 2.x,3.x etc. \u2013 see \"feature key\" below).<\/li><li><a download=\"\" href=\"\/wp-content\/uploads\/TCIA-CTC-6-to-9-mm-polyps.xls\" target=\"_blank\">TCIA CTC 6 to 9 mm polyps.xls<\/a>\u00a0- Contains 69 cases with smaller size polyps.<\/li><li><a download=\"\" href=\"\/wp-content\/uploads\/TCIA-CTC-no-polyp-found.xls\" target=\"_blank\">TCIA CTC no polyp found.xls<\/a>\u00a0- Contains 243 cases that were recorded as free of polyps by both CTC and optical techniques.<\/li><\/ol>\nThus in this CT Colonography collection you will be able to download the prone and supine DICOM images from OC same-day validated 243 negative cases, 69 cases with 6 to 9 mm polyps, and 35 cases which have at least one &gt; 10 mm polyp and their histological type. Below is the key for deciphering the features in the spreadsheet.\n<div class=\"cm-content-image\"><a href=\"\/wp-content\/uploads\/labeled_ccr.jpg\" rel=\"prettyPhoto noopener\" target=\"_blank\"><img src=\"\/wp-content\/uploads\/labeled_ccr.jpg\"\/><\/a><\/div>\n<strong> <em>WARNING: NCI cannot assure archive users of error-free validity of the XL polyp location data since NCI did not itself perform the clinical study or its analysis.<\/em> <\/strong>\nYou will note that two XLS files with positive findings have multiple columns descriptors of individual polyp lesions listed as in the table below.\u00a0 The meaning of the colored columns labeled \"LESION 1.1...1.2...1.3...1.4, etc\" is explained in the attached key-code \".tiff\" file entitled \"Polyp description key table.tiff\"). Some CT scan slice numbers where the polyps were found are provided, but unfortunately the table may not have complete slice number information \u2013 you'll just have to do the best you can with the data NCI was given.\n<div class=\"cm-content-image\"><a href=\"\/wp-content\/uploads\/labeled_ccr.jpg\" rel=\"prettyPhoto noopener\" target=\"_blank\"><img src=\"\/wp-content\/uploads\/labeled_ccr.jpg\"\/><\/a><\/div>\n<br\/>\n<strong>A note about the values in DICOM header (0010,1010) Patient Age<\/strong>: Within the CT COLONOGRAPHY collection, there are some ages that were anonymized to 105Y and 110Y which does not follow the standard TCIA de-identification procedure regarding ages 89 and older. TCIA policy is to bin any age over 89 into a common age group \"090Y\". Although these ages are not binned to 090Y, please be aware that they are not actual ages of patients.\n<br\/>","related_analysis_results":false,"subjects":"825","collection_short_title":"ACRIN 6664","data_types":["CT"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":["Image Analyses"],"collection_featured_image":false,"collection_summary":"The National CT Colonography Trial (ACRIN 6664) collection contains 825 cases of CT colonography imaging with accompanying spreadsheets that provide polyp descriptions and their location within the colon segments.\u00a0 Additional information about the trial is available in the <a data-linked-resource-container-id=\"3539213\" data-linked-resource-container-version=\"62\" data-linked-resource-content-type=\"application\/pdf\" data-linked-resource-default-alias=\"ACRIN 6664_protocol.pdf\" data-linked-resource-id=\"145753906\" data-linked-resource-type=\"attachment\" data-linked-resource-version=\"1\" data-nice-type=\"PDF Document\" download=\"\" href=\"\/wp-content\/uploads\/ACRIN-6664_protocol.pdf\" target=\"_blank\">Study Protocol<\/a> and <a data-linked-resource-container-id=\"3539213\" data-linked-resource-container-version=\"62\" data-linked-resource-content-type=\"application\/pdf\" data-linked-resource-default-alias=\"ACRIN 6664_CRF Set.pdf\" data-linked-resource-id=\"145753907\" data-linked-resource-type=\"attachment\" data-linked-resource-version=\"1\" data-nice-type=\"PDF Document\" download=\"\" href=\"\/wp-content\/uploads\/ACRIN-6664_CRF-Set.pdf\" target=\"_blank\">Case Report Forms<\/a>.\n<strong>Main Objective:<\/strong>\u00a0To clinically validate widespread use of computerized tomographic colonography (CTC) in a screening population for the detection of colorectal neoplasia.\n<strong>Participants:<\/strong>\u00a0Male and female outpatients, aged 50 years or older, scheduled\u00a0for screening colonoscopy, who have not had a colonoscopy in the past five years.\n<strong>Study Design Summary:<\/strong>\u00a0The study addresses aspects of central importance to the clinical application of CTC in several interrelated but independent parts that will be conducted in parallel. In Part I, the clinical performance of the CTC examination will be prospectively compared in a blinded fashion to colonoscopy. In Part II, optimization of the CT technique will be performed in view of new technological advances in CT technology. In Part III, lesion detection will be\u00a0optimized by studying the morphologic features of critical lesion types and in\u00a0the development of a database for computer-assisted diagnosis. In Part IV,\u00a0patient preferences and cost-effectiveness implications of observed performance\u00a0outcomes will be evaluated using a predictive model.","collection_acknowledgements":"","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5583"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5583"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5583"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}