{"id":5574,"date":"2023-09-04T03:09:33","date_gmt":"2023-09-04T03:09:33","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/covid-19-ar\/"},"modified":"2023-09-13T11:58:01","modified_gmt":"2023-09-13T11:58:01","slug":"covid-19-ar","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/covid-19-ar\/","title":{"rendered":"COVID-19-AR"},"featured_media":7740,"template":"","citation-tax":[],"cancer_types":["COVID-19 (non-cancer)"],"citations":[4425,4426,4427,2925,4428],"collection_doi":"10.7937\/tcia.2020.py71-5978","collection_download_info":"Click the Versions tab for more info about data releases.\nPlease contact <a href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a>\u00a0 with any questions regarding usage.","collection_downloads":[4975,4976],"full_export":"<h1 id=\"ChestImagingwithClinicalandGenomicCorrelatesRepresentingaRuralCOVID19PositivePopulation(COVID19AR)-Summary\">Summary<\/h1><span class=\"confluence-embedded-file-wrapper image-right-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image image-right\" draggable=\"false\" height=\"250\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/Public\/Chest%20Imaging%20with%20Clinical%20and%20Genomic%20Correlates%20Representing%20a%20Rural%20COVID-19%20Positive%20Population%20(COVID-19-AR)\/COVID-19%20AR.jpg?api=v2\"><\/span><p><span style=\"color: rgb(33,37,41);\">Radiology imaging\u00a0 is playing an increasingly vital role in the diagnosis of COVID-19 patients and determining therapeutic options, patient care management and new research directions. Publicly available imaging data is essential to drive new research by permitting the creation of large multi-site cohorts for machine learning based analyses.\u00a0 All too frequently rural populations are underrepresented in such public collections. In fact, the literature demonstrates there is very limited data on COVID-19 outcomes in rural populations, while it is well established that such populations have differentially high expression of key comorbidities.\u00a0 Similarly, while the number of genomes of the SARS-COV-2 virus are rapidly growing in public repositories, few samples represent the variants expressed in rural populations.\u00a0 This gap in available data is of particular importance given that the southern United States, as of July 2020, is the most rapidly expanding\u00a0 COVID-19 hot spot on earth. We have published a collection of radiographic and CT imaging studies for patients who tested positive for COVID-19. Each patient is described by a limited set of clinical data correlates that includes demographics, comorbidities, selected lab data and key radiology findings.\u00a0These data are cross-linked to SARS-COV-2 cDNA sequence data extracted from clinical isolates from the same population, uploaded to the Genbank repository. We believe this collection will help to define appropriate correlative data and contribute samples from this normally underrepresented population to the global research community.<\/span><\/p><h3 id=\"ChestImagingwithClinicalandGenomicCorrelatesRepresentingaRuralCOVID19PositivePopulation(COVID19AR)-TCIACOVID-19Datasets\"><span style=\"color: rgb(33,37,41);\">TCIA COVID-19 Datasets<\/span><\/h3><p><span style=\"color: rgb(33,37,41);\">Additional datasets and information about TCIA efforts to support COVID-19 research can be found\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/pages\/viewpage.action?pageId=70225256\">here<\/a>.<\/span><\/p><h3 id=\"ChestImagingwithClinicalandGenomicCorrelatesRepresentingaRuralCOVID19PositivePopulation(COVID19AR)-Acknowledgements\"><span>Acknowledgements<\/span><\/h3><p>We would like to acknowledge the individuals and institutions that have provided data for this collection:<\/p><ul><li><p><span style=\"color: rgb(33,37,41);\">The University of Arkansas for Medical Sciences (UAMS) Translational Research Institute, Department of Radiology, Department of Biomedical Informatics and Department of Surgery, Little Rock, Arkansas, USA.<\/span><\/p><\/li><\/ul><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#7022644344a4bfcf0af841558058172675324c70\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#702264439f6e465db7e5421b8f47e08415e28227\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#70226443d5b207776f9646d8b1371b7aa20fea31\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#70226443267960c2112d4a6d9b8e85d7bc59de98\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"7022644344a4bfcf0af841558058172675324c70\" active=\"true\" name=\"Data Access\" ><h3 id=\"ChestImagingwithClinicalandGenomicCorrelatesRepresentingaRuralCOVID19PositivePopulation(COVID19AR)-DataAccess\">Data Access<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 59.5289%;\"><colgroup><col style=\"width: 30.4969%;\"\/><col style=\"width: 38.7907%;\"\/><col style=\"width: 30.6752%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\"><p>Images (DICOM, 19.0 GB)<\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70226443\/COVID-19-AR-July132020_NBIA-manifest.tcia?version=1&amp;modificationDate=1594658316635&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=COVID-19-AR\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p><span style=\"color: rgb(33,37,41);letter-spacing: 0.0px;\">(Download requires\u00a0<\/span><span style=\"letter-spacing: 0.0px;color: rgb(33,37,41);\">the\u00a0<\/span><a rel=\"nofollow\" style=\"letter-spacing: 0.0px;\" href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a><span style=\"letter-spacing: 0.0px;\">)<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p class=\"auto-cursor-target\">\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/4.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 4.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Clinical data (CSV)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70226443\/COVID-19%20AR%20Clinical%20Correlates%20July202020.xlsx?version=1&amp;modificationDate=1594659431356&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/4.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 4.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><p><span style=\"color: rgb(23,43,77);\">Please contact <a class=\"external-link\" rel=\"nofollow\" href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a>\u00a0 with any questions regarding usage.<\/span><\/p><h3 style=\"text-align: left;\" id=\"ChestImagingwithClinicalandGenomicCorrelatesRepresentingaRuralCOVID19PositivePopulation(COVID19AR)-AdditionalResourcesforthisDataset\">Additional Resources for this Dataset<\/h3><p>The following external resources have been made available by the data submitters.\u00a0 These are not hosted or supported by TCIA, but may be useful to researchers utilizing this collection.<\/p><ul><li><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/nuccore\/MT766907\" class=\"external-link\" rel=\"nofollow\">Viral Genomes Genbank repository<\/a> (<span style=\"color: rgb(51,51,51);text-decoration: none;\">a<\/span><span style=\"color: rgb(51,51,51);text-decoration: none;\">ccession no.\u00a0<\/span><span style=\"color: black;text-decoration: none;\"><span style=\"color: rgb(51,51,51);text-decoration: none;\">MT766907<\/span><\/span><span style=\"color: rgb(51,51,51);text-decoration: none;\">: USA\/AR-UAMS001\/2020)<\/span><\/li><li><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/nuccore\/MT766908\" class=\"external-link\" rel=\"nofollow\">Viral Genomes Genbank repository<\/a> (<span style=\"color: rgb(51,51,51);text-decoration: none;\">accession no. <span style=\"color: black;text-decoration: none;\"><span style=\"color: rgb(51,51,51);text-decoration: none;\">MT766908<\/span><\/span>: USA\/AR-UAMS002\/2020<\/span>)<\/li><\/ul><p><span style=\"color: rgb(33,37,41);\">The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.<\/span><\/p><ul style=\"text-align: left;\"><li class=\"auto-cursor-target\"><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=covid_19_ar\" class=\"external-link\" rel=\"nofollow\">Imaging Data Commons (IDC)<\/a><span>\u00a0<\/span>(Imaging Data)<\/li><\/ul><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"702264439f6e465db7e5421b8f47e08415e28227\" name=\"Detailed Description\" ><h3 id=\"ChestImagingwithClinicalandGenomicCorrelatesRepresentingaRuralCOVID19PositivePopulation(COVID19AR)-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><p>Image Statistics<\/p><\/th><th class=\"confluenceTh\"><br\/><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td class=\"confluenceTd\"><p>CT, CR, DX<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Patients<\/p><\/td><td class=\"confluenceTd\"><p>105<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td class=\"confluenceTd\"><p>256<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td class=\"confluenceTd\"><p>461<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\"><p>31,935<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images Size (GB)<\/td><td colspan=\"1\" class=\"confluenceTd\">19.0<\/td><\/tr><\/tbody><\/table><\/div><\/div><div class=\"tabs-pane \" id=\"70226443d5b207776f9646d8b1371b7aa20fea31\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"ChestImagingwithClinicalandGenomicCorrelatesRepresentingaRuralCOVID19PositivePopulation(COVID19AR)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy<\/h3><p><span style=\"color: rgb(33,37,41);\">\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/span><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Desai, S., Baghal, A., Wongsurawat, T., Al-Shukri, S., Gates, K., Farmer, P., Rutherford, M., Blake, G.D., Nolan, T., Powell, T., Sexton, K., Bennett, W., Prior, F. (2020). <em>Data from<\/em>\u00a0<span style=\"color: rgb(51,51,51);\"><strong>Chest Imaging with Clinical and Genomic Correlates Representing a Rural COVID-19 Positive Population\u00a0<\/strong><span style=\"color: rgb(0,0,0);\">[Data set]<\/span>. The Cancer Imaging Archive. DOI:\u00a0<\/span><span style=\"color: rgb(33,33,33);\"><a href=\"https:\/\/www.doi.org\/10.7937\/tcia.2020.py71-5978\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/tcia.2020.py71-5978<\/a>.<\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Acknowledgement<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(34,34,34);\">This project has been funded in whole or in part with federal funds from the National Center for Advancing Translational Sciences\u00a0 UL1 TR003107 and\u00a0 the National Cancer Institute, Contract No. 75N91019D00024, Subcontract 20X023F.\u00a0<\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(33,33,33);\">Desai, S., Baghal, A., Wongsurawat, T., Jenjaroenpun, P., Powell, T., Al-Shukri, S., Gates, K., Farmer, P., Rutherford, M., Blake, G., Nolan, T., Sexton, K., Bennett, W., Smith, K., Syed, S.,<span>\u00a0<\/span>Prior, F. (2020). <strong>Chest imaging representing a COVID-19 positive rural U.S. population<\/strong>. Scientific Data. 2020;7(1):414. doi: <a href=\"https:\/\/doi.org\/10.1038\/s41597-020-00741-6\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1038\/s41597-020-00741-6<\/a>.<\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Jenjaroenpun, P., Wanchai, V., OnoMoore, K.D., Laudadio, J., James, L.P., Adams, S.H., Prior, F., Nookaew, I., Ussery, D.W., Wongsurawat, T. (2020). <strong>Two SARS-CoV-2 genome sequences of isolates from rural U.S. patients harboring the D614G mutation, obtained using Nanopore sequencing<\/strong>. Microbiology Resource Announcements, 2020.\u00a0<span style=\"color: rgb(0,0,0);\">DOI:\u00a0<a href=\"https:\/\/doi.org\/10.1128\/MRA.01109-20\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1128\/MRA.01109-20<\/a>.\u00a0<\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(0,0,0);\">Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., &amp; Prior, F. (2013). <\/span><strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository.<\/strong><span style=\"color: rgb(0,0,0);\"> In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045\u20131057). Springer Science and Business Media LLC. <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/a> PMCID: PMC3824915<\/span><\/p><\/div><\/div><h3 id=\"ChestImagingwithClinicalandGenomicCorrelatesRepresentingaRuralCOVID19PositivePopulation(COVID19AR)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains\u00a0<\/span><a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\">a list of publications<\/a><span> which leverage our data. <\/span> If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\"> contact TCIA's Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"70226443267960c2112d4a6d9b8e85d7bc59de98\" name=\"Versions\" ><h3 id=\"ChestImagingwithClinicalandGenomicCorrelatesRepresentingaRuralCOVID19PositivePopulation(COVID19AR)-Version1(Current):Updated2020\/07\/13\">Version 1 (Current): Updated 2020\/07\/13<\/h3><div class=\"table-wrap\"><table class=\"wrapped fixed-table confluenceTable\"><colgroup><col style=\"width: 231.0px;\"\/><col style=\"width: 439.0px;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><span>Data Type<\/span><\/th><th class=\"confluenceTh\"><span>Download all or Query\/Filter<\/span><\/th><\/tr><tr><td class=\"confluenceTd\"><p><span>Images (DICOM, 19.0 GB)<\/span><\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70226443\/COVID-19-AR-July132020_NBIA-manifest.tcia?version=1&amp;modificationDate=1594658316635&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;CollectionCriteria=COVID-19-AR\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><br\/><\/p><p>(Requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a><span>.<\/span>)<\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\"><span>Clinical Data (CSV)<\/span><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70226443\/COVID-19%20AR%20Clinical%20Correlates%20July202020.xlsx?version=1&amp;modificationDate=1594659431356&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><h3 style=\"text-align: left;\" id=\"ChestImagingwithClinicalandGenomicCorrelatesRepresentingaRuralCOVID19PositivePopulation(COVID19AR)-AdditionalResourcesforthisDataset.1\">Additional Resources for this Dataset<\/h3><p><br\/><\/p><ul><li><span style=\"color: rgb(33,37,41);text-decoration: none;\"><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/nuccore\/MT766907\" class=\"external-link\" rel=\"nofollow\">Viral Genomes Genbank repository <\/a>(<span style=\"color: rgb(51,51,51);text-decoration: none;\">accession no.\u00a0<\/span><span style=\"color: black;text-decoration: none;\"><span style=\"color: rgb(51,51,51);text-decoration: none;\">MT766907<\/span><\/span><span style=\"color: rgb(51,51,51);text-decoration: none;\">: USA\/AR-UAMS001\/2020)<\/span><\/span><\/li><li><span style=\"color: rgb(33,37,41);text-decoration: none;\"><span style=\"color: rgb(51,51,51);text-decoration: none;\"><span style=\"color: rgb(33,37,41);text-decoration: none;\"><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/nuccore\/MT766908\" class=\"external-link\" rel=\"nofollow\">Viral Genomes Genbank repository<\/a> (<span style=\"color: rgb(51,51,51);text-decoration: none;\">accession no.\u00a0<\/span><span style=\"color: black;text-decoration: none;\"><span style=\"color: rgb(51,51,51);text-decoration: none;\">MT766908<\/span><\/span><span style=\"color: rgb(51,51,51);text-decoration: none;\">: USA\/AR-UAMS002\/2020)<\/span><\/span><\/span><\/span><\/li><\/ul><\/div><\/div><\/div><\/div><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p>","versions":false,"additional_resources":"The following external resources have been made available by the data submitters.\u00a0 These are not hosted or supported by TCIA, but may be useful to researchers utilizing this collection.\n<ul><li><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/nuccore\/MT766907\">Viral Genomes Genbank repository<\/a> (accession no.\u00a0MT766907: USA\/AR-UAMS001\/2020)<\/li><li><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/nuccore\/MT766908\">Viral Genomes Genbank repository<\/a> (accession no. MT766908: USA\/AR-UAMS002\/2020)<\/li><\/ul>\nThe NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.\n<ul><li><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=covid_19_ar\">Imaging Data Commons (IDC)<\/a>\u00a0(Imaging Data)<\/li><\/ul>\n<br\/>","cancer_locations":["Lung"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"","collection_status":"Ongoing","publications_using":"TCIA maintains\u00a0<a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a> which leverage our data.  If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact TCIA's Helpdesk<\/a>.","species":["Human"],"collection_title":"Chest Imaging with Clinical and Genomic Correlates Representing a Rural COVID-19 Positive Population","detailed_description":"","related_analysis_results":false,"subjects":"105","collection_short_title":"COVID-19-AR","data_types":["CT","DX","CR"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":["Clinical","Genomics"],"collection_featured_image":{"ID":"7740","post_author":"6","post_date":"2023-09-13 03:41:07","post_date_gmt":"2023-09-13 03:41:07","post_content":"","post_title":"COVID-19-AR","post_excerpt":"","post_status":"inherit","comment_status":"open","ping_status":"closed","post_password":"","post_name":"covid-19-ar-2","to_ping":"","pinged":"","post_modified":"2023-09-13 11:58:01","post_modified_gmt":"2023-09-13 11:58:01","post_content_filtered":"","post_parent":"5574","guid":"https:\/\/cm.vastapps.dev\/wp-content\/uploads\/COVID-19-AR.jpg","menu_order":"0","post_type":"attachment","post_mime_type":"image\/jpeg","comment_count":"0","pod_item_id":"7740"},"collection_summary":"<p>Radiology imaging\u00a0 is playing an increasingly vital role in the diagnosis of COVID-19 patients and determining therapeutic options, patient care management and new research directions. Publicly available imaging data is essential to drive new research by permitting the creation of large multi-site cohorts for machine learning based analyses.\u00a0 All too frequently rural populations are underrepresented in such public collections. In fact, the literature demonstrates there is very limited data on COVID-19 outcomes in rural populations, while it is well established that such populations have differentially high expression of key comorbidities.\u00a0 Similarly, while the number of genomes of the SARS-COV-2 virus are rapidly growing in public repositories, few samples represent the variants expressed in rural populations.\u00a0 This gap in available data is of particular importance given that the southern United States, as of July 2020, is the most rapidly expanding\u00a0 COVID-19 hot spot on earth. We have published a collection of radiographic and CT imaging studies for patients who tested positive for COVID-19. Each patient is described by a limited set of clinical data correlates that includes demographics, comorbidities, selected lab data and key radiology findings.\u00a0These data are cross-linked to SARS-COV-2 cDNA sequence data extracted from clinical isolates from the same population, uploaded to the Genbank repository. We believe this collection will help to define appropriate correlative data and contribute samples from this normally underrepresented population to the global research community.<\/p>\n<h3>TCIA COVID-19 Datasets<\/h3>\nAdditional datasets and information about TCIA efforts to support COVID-19 research can be found\u00a0<a href=\"\/display\/Public\/COVID-19\">here<\/a>.","collection_acknowledgements":"We would like to acknowledge the individuals and institutions that have provided data for this collection:\n<ul><li><p>The University of Arkansas for Medical Sciences (UAMS) Translational Research Institute, Department of Radiology, Department of Biomedical Informatics and Department of Surgery, Little Rock, Arkansas, USA.<\/p><\/li><\/ul>\n<br\/>","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5574"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media\/7740"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5574"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5574"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}