{"id":5558,"date":"2023-09-04T03:08:12","date_gmt":"2023-09-04T03:08:12","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/breast-diagnosis\/"},"modified":"2023-09-13T11:57:11","modified_gmt":"2023-09-13T11:57:11","slug":"breast-diagnosis","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/breast-diagnosis\/","title":{"rendered":"BREAST-DIAGNOSIS"},"featured_media":0,"template":"","citation-tax":[],"cancer_types":["Breast Cancer"],"citations":[4399,2925],"collection_doi":"http:\/\/doi.org\/10.7937\/K9\/TCIA.2015.SDNRQXXR","collection_download_info":"Click the Versions tab for more info about data releases.","collection_downloads":[4944,4945],"full_export":"<h2 id=\"BREASTDIAGNOSIS-Summary\">Summary<\/h2><p>The Breast-Diagnosis collection contains cases that are high-risk normals, DCIS, fibroids and lobular carcinomas. Each case has 3 or more distinct MR pulse sequences from a Phillips 1.5 T (usual sequences are labeled T2, STIR and BLISS but may occasionally include other pulse sequences and digital mammogram of tumor specimen). Multiple time point studies on the same patient are possible.The following is relevant to analyzing the contrast dynamics of the BLISS pulse sequences. The pulse sequence parameters (repetition, echo time, etc.) can be extracted from the DICOM tags. The contrast aspects are as follows: The volume of Magnevist (Bayer) gadolinium contrast injected into the brachial vein is based on a rule of thumb which in ml's is 10% of the patient weight in POUNDS (NOT kilograms as is recorded in the DICOM patient weight tag. Hence the injected volume for a 150 lb patient is 15 ml. (the DICOM tag entry on that patient will read &quot;68&quot;). The injection itself is 6 or 7 seconds, at a rate of 3cc per second. The first dynamic sequence is started 1 minute after the injection is started. Slice and pulse parameters are accessible in the DICOM tags.<\/p><p>This collection also includes a spreadsheet (updated 7\/16\/11) with BIRADS MRI features from the imaging report and denoted key image slice with the approximate X-Y center position if a mass was found. Key clinical features and abstracts of the pathology report including ER, PR and HER2 results and Oncotype score are included when available.<\/p><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#2621477eccbca0dff3b4268b580ab5b2f56ec1c\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#2621477f047d193afe0418d920b633c6e132b91\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#2621477a76ed9ccddd44b5c8833cb272a2d4cdb\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#262147764486c32acd84a5a85576e88f101fe72\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"2621477eccbca0dff3b4268b580ab5b2f56ec1c\" active=\"true\" name=\"Data Access\" ><h3 id=\"BREASTDIAGNOSIS-DataAccess\">Data Access<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 66.2641%;\"><colgroup><col style=\"width: 25.0156%;\"\/><col style=\"width: 43.1212%;\"\/><col style=\"width: 31.7932%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Images (DICOM, 60.8GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/2621477\/TCIA_BREAST-DIAGNOSIS_06-22-2015.tcia?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/www.cancerimagingarchive.net\/nbia-search\/?CollectionCriteria=BREAST-DIAGNOSIS\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><\/p><br\/><p><span class=\"confluence-link\"><span>(Requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a> <\/span> <span>)<\/span><\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Clinical, pathology, radiologist reports (XLS)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/2621477\/TCIA%20Breast%20clinical%20data%20public%207_16_11.xlsx?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><p>\n<h3 id=\"BREASTDIAGNOSIS-AdditionalResourcesforthisDataset\">Additional Resources for this Dataset<\/h3>\n<p>The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.<\/p><\/p><ul><li class=\"auto-cursor-target\"><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=breast_diagnosis\" class=\"external-link\" rel=\"nofollow\">Imaging Data Commons (IDC)<\/a> (Imaging Data)<\/li><\/ul><h3 id=\"BREASTDIAGNOSIS-ThirdPartyAnalysesofthisDataset\">Third Party Analyses of this Dataset<\/h3><p>TCIA encourages the community to <a href=\"http:\/\/www.cancerimagingarchive.net\/analysis-results\/\" class=\"external-link\" rel=\"nofollow\">publish your analyses of our datasets<\/a>. Below is a list of such third party analyses published using this Collection:<\/p><ul><li><a href=\"https:\/\/wiki.cancerimagingarchive.net\/pages\/viewpage.action?pageId=52763018\">SDTM datasets of clinical data and measurements for selected cancer collections to TCIA (DI-Cubed-Reports)<\/a><\/li><li><a href=\"https:\/\/wiki.cancerimagingarchive.net\/pages\/viewpage.action?pageId=50135479\">DICOM SR of clinical data and measurement for breast cancer collections to TCIA (DICOM-SR-Breast-Clinical)<\/a><\/li><\/ul><\/div><div class=\"tabs-pane \" id=\"2621477f047d193afe0418d920b633c6e132b91\" name=\"Detailed Description\" ><h3 id=\"BREASTDIAGNOSIS-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p>Collection Statistics<\/p><\/div><\/th><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p><br\/><\/p><\/div><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td class=\"confluenceTd\"><p>MR, MG, CT, PT<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Subjects<\/p><\/td><td class=\"confluenceTd\"><p>88<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td class=\"confluenceTd\"><p>148<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td class=\"confluenceTd\"><p>429<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\"><p>105,050<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Image Size (GB)<\/td><td colspan=\"1\" class=\"confluenceTd\">60.8<\/td><\/tr><\/tbody><\/table><\/div><\/div><div class=\"tabs-pane \" id=\"2621477a76ed9ccddd44b5c8833cb272a2d4cdb\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"BREASTDIAGNOSIS-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy\u00a0<\/h3><p class=\"auto-cursor-target\">\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Bloch, B. Nicolas, Jain, Ashali, &amp; Jaffe, C. Carl. (2015). <strong>BREAST-DIAGNOSIS [Data set].<\/strong> The Cancer Imaging Archive. <a href=\"http:\/\/doi.org\/10.7937\/K9\/TCIA.2015.SDNRQXXR\" class=\"external-link\" rel=\"nofollow\">http:\/\/doi.org\/10.7937\/K9\/TCIA.2015.SDNRQXXR<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., &amp; Prior, F. (2013). <strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. <\/strong>In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045\u20131057). Springer Science and Business Media LLC. <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/a> PMCID: PMC3824915<\/p><\/div><\/div><h3 id=\"BREASTDIAGNOSIS-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span style=\"font-size: 14.0px;line-height: 1.42857;\">TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\">a list of publications<\/a> which leverage our data. <\/span>If you have a <span>manuscript <\/span>you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" style=\"line-height: 1.42857;\" class=\"external-link\" rel=\"nofollow\"> contact TCIA's Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"262147764486c32acd84a5a85576e88f101fe72\" name=\"Versions\" ><h3 id=\"BREASTDIAGNOSIS-Version1(Current):Updated2011\/11\/09\">Version 1 (Current): Updated 2011\/11\/09<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td class=\"confluenceTd\">Images (DICOM, 60.8GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/2621477\/TCIA_BREAST-DIAGNOSIS_06-22-2015.tcia?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/www.cancerimagingarchive.net\/nbia-search\/?CollectionCriteria=BREAST-DIAGNOSIS\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><span class=\"confluence-link\"> <span>(Requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a> <\/span> <span>)<\/span> <br\/><\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\"><span>Clinical, pathology, radiologist reports <\/span>(XLS)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/2621477\/TCIA%20Breast%20clinical%20data%20public%207_16_11.xlsx?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><p><br\/><br\/><\/p><p><br\/><\/p>","versions":false,"additional_resources":"The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.\n \n<ul><li><a href=\"https:\/\/portal.imaging.datacommons.cancer.gov\/explore\/filters\/?collection_id=breast_diagnosis\">Imaging Data Commons (IDC)<\/a> (Imaging Data)<\/li><\/ul>","cancer_locations":["Breast"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"TCIA encourages the community to <a href=\"http:\/\/www.cancerimagingarchive.net\/analysis-results\/\">publish your analyses of our datasets<\/a>. Below is a list of such third party analyses published using this Collection:\n<ul><li><a href=\"\/pages\/viewpage.action?pageId=52763018\">SDTM datasets of clinical data and measurements for selected cancer collections to TCIA (DI-Cubed-Reports)<\/a><\/li><li><a href=\"\/pages\/viewpage.action?pageId=50135479\">DICOM SR of clinical data and measurement for breast cancer collections to TCIA (DICOM-SR-Breast-Clinical)<\/a><\/li><\/ul>","collection_status":"Complete","publications_using":"TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a> which leverage our data. If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact TCIA's Helpdesk<\/a>.","species":["Human"],"collection_title":"BREAST-DIAGNOSIS","detailed_description":"","related_analysis_results":["DICOM-SR-BREAST-CLINICAL","DI-CUBED-REPORTS"],"subjects":"88","collection_short_title":"BREAST-DIAGNOSIS","data_types":["MR","PT","CT","MG"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":["Clinical","Image Analyses"],"collection_featured_image":false,"collection_summary":"The Breast-Diagnosis collection contains cases that are high-risk normals, DCIS, fibroids and lobular carcinomas. Each case has 3 or more distinct MR pulse sequences from a Phillips 1.5 T (usual sequences are labeled T2, STIR and BLISS but may occasionally include other pulse sequences and digital mammogram of tumor specimen). Multiple time point studies on the same patient are possible.The following is relevant to analyzing the contrast dynamics of the BLISS pulse sequences. The pulse sequence parameters (repetition, echo time, etc.) can be extracted from the DICOM tags. The contrast aspects are as follows: The volume of Magnevist (Bayer) gadolinium contrast injected into the brachial vein is based on a rule of thumb which in ml's is 10% of the patient weight in POUNDS (NOT kilograms as is recorded in the DICOM patient weight tag. Hence the injected volume for a 150 lb patient is 15 ml. (the DICOM tag entry on that patient will read \"68\"). The injection itself is 6 or 7 seconds, at a rate of 3cc per second. The first dynamic sequence is started 1 minute after the injection is started. Slice and pulse parameters are accessible in the DICOM tags.\nThis collection also includes a spreadsheet (updated 7\/16\/11) with BIRADS MRI features from the imaging report and denoted key image slice with the approximate X-Y center position if a mass was found. Key clinical features and abstracts of the pathology report including ER, PR and HER2 results and Oncotype score are included when available.\n<br\/>","collection_acknowledgements":"","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5558"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5558"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5558"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}