{"id":5536,"date":"2023-09-04T03:06:28","date_gmt":"2023-09-04T03:06:28","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/apollo-1-va\/"},"modified":"2023-09-13T11:56:16","modified_gmt":"2023-09-13T11:56:16","slug":"apollo-1-va","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/apollo-1-va\/","title":{"rendered":"APOLLO-1-VA"},"featured_media":0,"template":"","citation-tax":[],"cancer_types":false,"citations":[4341,2925],"collection_doi":"","collection_download_info":"Click the\u00a0<strong>Download<\/strong> button\u00a0to save a \".tcia\" manifest file to your computer, which you must open with the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a>.\u00a0Click\u00a0the <strong>Search<\/strong> button to open our Data Portal, where you can browse the data collection and\/or download a subset of its contents.\n\nClick the Versions tab for more info about data releases.","collection_downloads":[4898,4899],"full_export":"<p><br\/><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(255,0,0);\"><u><strong>THIS PAGE HAS BEEN DEPRECATED<\/strong><\/u><\/span>. Data from the collection formerly called APOLLO-1-VA has been migrated to the APOLLO-5-LSCC collection. Please view the APOLLO-5-LSCC page to obtain access to these data: <a href=\"https:\/\/doi.org\/10.7937\/TCIA.QQ0G-EB24\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/TCIA.QQ0G-EB24<\/a>.<\/p><\/div><\/div><p><br\/><\/p><h2 id=\"APOLLO1VA-Summary\">Summary<\/h2>This data collection consists of images and associated data acquired from the <a href=\"https:\/\/proteomics.cancer.gov\/programs\/apollo-network\" class=\"external-link\" rel=\"nofollow\">APOLLO Network<\/a>.<\/p><p>The <strong><em>A<\/em><\/strong>pplied <strong><em>P<\/em><\/strong>roteogenomics <strong><em>O<\/em><\/strong>rganizationa<strong><em>L<\/em><\/strong> <strong><em>L<\/em><\/strong>earning and <strong><em>O<\/em><\/strong>utcomes (APOLLO) network is a collaboration between\u00a0NCI, the Department of Defense (DoD), and the Department of Veterans Affairs (VA) to incorporate proteogenomics into patient care as a way of looking beyond the genome, to the activity and expression of the proteins that the genome encodes. The emerging field of proteogenomics aims to better predict how patients will respond to therapy by screening their tumors for both genetic abnormalities and protein information, an approach that has been made possible in recent years due to advances in proteomic technology.<\/p><p>Date-handling policy is described in the Detailed Description section below.<p><span style=\"line-height: 1.42857;\">Please <a class=\"external-link\" style=\"text-decoration: none;text-align: left;\" href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" rel=\"nofollow\">contact TCIA's Helpdesk<\/a><span style=\"color: rgb(33,37,41);\"> <\/span>with any questions regarding usage.<\/span><\/p><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#242819114fbe448b42cc4ace8b278fccf2813f19\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#242819119d01e7daf51b46158c3d33e8fb662d12\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#24281911e16fe234091144e28bf0dcf8d5f2eb4c\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#24281911953c510266704797bf4c0bb2e8e7e04f\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"242819114fbe448b42cc4ace8b278fccf2813f19\" active=\"true\" name=\"Data Access\" ><h3 id=\"APOLLO1VA-DataAccess\">Data Access<\/h3><p><span>C<\/span><span>lick the\u00a0<\/span><strong>Download<\/strong><span> button\u00a0to save a &quot;.tcia&quot; manifest file to your computer, which you must open with the <\/span><a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a><span>.\u00a0Click\u00a0the <\/span><strong>Search<\/strong><span> button to open our Data Portal, where you can browse the data collection and\/or download a subset of its contents.<\/span><\/p><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th colspan=\"1\" class=\"confluenceTh\">Data Type<\/th><th colspan=\"1\" class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images (DICOM, <strong><span style=\"color: rgb(51,153,102);\">2.6 GB<\/span><\/strong>)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Clinical &amp; Genomic data<\/td><td colspan=\"1\" class=\"confluenceTd\"><br\/><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><\/div><div class=\"tabs-pane \" id=\"242819119d01e7daf51b46158c3d33e8fb662d12\" name=\"Detailed Description\" ><h3 id=\"APOLLO1VA-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p>Collection Statistics<\/p><\/div><\/th><th class=\"confluenceTh\"><div class=\"tablesorter-header-inner\"><p><br\/><\/p><\/div><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td class=\"confluenceTd\"><p>PET, CT, MRI, MRA + others<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Participants<\/p><\/td><td class=\"confluenceTd\"><p>7<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td class=\"confluenceTd\"><p>\u00a036<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td class=\"confluenceTd\"><p>\u00a043<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\"><p>\u00a06203<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Image Size (GB)<\/td><td colspan=\"1\" class=\"confluenceTd\">\u00a02.6<\/td><\/tr><\/tbody><\/table><\/div><p><br\/><\/p><p>For more information about <strong>APOLLO Date Handling and De-identification<\/strong> (Date of Diagnosis and Diagnosis Year)\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/fZUvB\" rel=\"nofollow\">click here<\/a>.<\/p><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"24281911e16fe234091144e28bf0dcf8d5f2eb4c\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"APOLLO1VA-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy\u00a0<\/h3><p><span>This data set may be subject to usage restrictions set out by the APOLLO network. In addtion, TCIA usage and citation guidelines must be followed. See TCIA's <a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/Public\/Data+Usage+Policies+and+Restrictions\" rel=\"nofollow\">Data Usage Policies and Restrictions<\/a> for details. Questions may be directed to\u00a0<a href=\"mailto:help@cancerimagingarchive.net\" rel=\"nofollow\" class=\"external-link\">help@cancerimagingarchive.net<\/a>.<\/span><\/p><p><span style=\"color: rgb(255,0,0);\"><u><strong>Please be sure to include the following citations in your work if you use this data set:<\/strong><\/u><\/span><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>coming soon<\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F.\u00a0<strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (<a href=\"http:\/\/link.springer.com\/article\/10.1007%2Fs10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">paper<\/a>)<\/p><\/div><\/div><h3 id=\"APOLLO1VA-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains<a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\"> a list of publications<\/a> that leverage our data. At this time, we are not aware of any publications based on this data. <\/span>If you have a publication you'd like to add, please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\"> contact the TCIA Helpdesk<\/a>.<\/p><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"24281911953c510266704797bf4c0bb2e8e7e04f\" name=\"Versions\" ><h3 id=\"APOLLO1VA-Version1(Current):Updated2015\/09\/14\">Version 1 (Current): Updated 2015\/09\/14<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 30.9645%;\"><colgroup><col style=\"width: 41.4118%;\"\/><col style=\"width: 58.5412%;\"\/><\/colgroup><tbody><tr><th colspan=\"1\" class=\"confluenceTh\">Data Type<\/th><th colspan=\"1\" class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images (DICOM, <span style=\"color: rgb(51,153,102);\"><strong>2.6 GB<\/strong><\/span>)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/><\/p><p><span class=\"confluence-link\">(Requires <span>the <\/span><a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a><span>.)<\/span><\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div>","versions":false,"additional_resources":"","cancer_locations":false,"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"","collection_status":"","publications_using":"TCIA maintains<a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\"> a list of publications<\/a> that leverage our data. At this time, we are not aware of any publications based on this data. If you have a publication you'd like to add, please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact the TCIA Helpdesk<\/a>.\n<br\/>","species":false,"collection_title":"APOLLO-1-VA","detailed_description":"<br\/>\nFor more information about <strong>APOLLO Date Handling and De-identification<\/strong> (Date of Diagnosis and Diagnosis Year)\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/fZUvB\">click here<\/a>.\n<br\/>","related_analysis_results":false,"subjects":[],"collection_short_title":"APOLLO-1-VA","data_types":false,"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":false,"collection_featured_image":false,"collection_summary":"<br\/>\n<div><p><u><strong>THIS PAGE HAS BEEN DEPRECATED<\/strong><\/u>. Data from the collection formerly called APOLLO-1-VA has been migrated to the APOLLO-5-LSCC collection. Please view the APOLLO-5-LSCC page to obtain access to these data: <a href=\"https:\/\/doi.org\/10.7937\/TCIA.QQ0G-EB24\">https:\/\/doi.org\/10.7937\/TCIA.QQ0G-EB24<\/a>.<\/p><\/div>\n<br\/>\nThis data collection consists of images and associated data acquired from the <a href=\"https:\/\/proteomics.cancer.gov\/programs\/apollo-network\">APOLLO Network<\/a>.<p>The <strong><em>A<\/em><\/strong>pplied <strong><em>P<\/em><\/strong>roteogenomics <strong><em>O<\/em><\/strong>rganizationa<strong><em>L<\/em><\/strong> <strong><em>L<\/em><\/strong>earning and <strong><em>O<\/em><\/strong>utcomes (APOLLO) network is a collaboration between\u00a0NCI, the Department of Defense (DoD), and the Department of Veterans Affairs (VA) to incorporate proteogenomics into patient care as a way of looking beyond the genome, to the activity and expression of the proteins that the genome encodes. The emerging field of proteogenomics aims to better predict how patients will respond to therapy by screening their tumors for both genetic abnormalities and protein information, an approach that has been made possible in recent years due to advances in proteomic technology.<\/p><p>Date-handling policy is described in the Detailed Description section below.<\/p>\nPlease <a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact TCIA's Helpdesk<\/a> with any questions regarding usage.\n<br\/>","collection_acknowledgements":"","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5536"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5536"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5536"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}