{"id":5525,"date":"2023-09-04T03:01:22","date_gmt":"2023-09-04T03:01:22","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-collection\/ovarian-bevacizumab-response\/"},"modified":"2023-09-13T11:55:48","modified_gmt":"2023-09-13T11:55:48","slug":"ovarian-bevacizumab-response","status":"publish","type":"tcia_collection","link":"https:\/\/cm.vastapps.dev\/tcia-collection\/ovarian-bevacizumab-response\/","title":{"rendered":"OVARIAN-BEVACIZUMAB-RESPONSE"},"featured_media":7613,"template":"","citation-tax":[],"cancer_types":["Ovarian Cancer"],"citations":[4327,4328,2925],"collection_doi":"10.7937\/TCIA.985G-EY35","collection_download_info":"Click the Versions tab for more info about data releases.\nPlease contact <a href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a>\u00a0 with any questions regarding usage.","collection_downloads":[4877,4878],"full_export":"<h1 id=\"AdatasetofhistopathologicalwholeslideimagesforclassificationofTreatmenteffectivenesstoovariancancer(OvarianBevacizumabResponse)-Summary\">Summary<\/h1><p><span style=\"color: rgb(32,33,36);\"><span class=\"confluence-embedded-file-wrapper image-right-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-content-image-border image-right\" draggable=\"false\" width=\"450\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/Public\/A%20dataset%20of%20histopathological%20whole%20slide%20images%20for%20classification%20of%20Treatment%20effectiveness%20to%20ovarian%20cancer%20(Ovarian%20Bevacizumab%20Response)\/ob-response.png?api=v2\"><\/span>Despite the progress made during the last two decades in the surgery and chemotherapy of ovarian cancer, more than 70% of advanced patients are with recurrent cancer and decease. Bevacizumab has been recently approved by FDA as a monotherapy for advanced ovarian cancer in combination with chemotherapy. Considering the cost, potential toxicity, and finding that only a portion of patients will benefit from these drugs, the identification of a new predictive method for the treatment of ovarian cancer remains an urgent unmet medical need. Prediction of therapeutic effects and individualization of therapeutic strategies are critical, but to the authors' best knowledge, there are no effective biomarkers that can be used to predict patient response to bevacizumab treatment for ovarian cancer. This dataset helps researchers to explore and develop methods to predict the therapeutic effect of patients with epithelial ovarian cancer to bevacizumab.<\/span><\/p><p><span style=\"letter-spacing: 0.0px;color: rgb(32,33,36);\">The dataset consists of de-identified 288 hematoxylin and eosin (H&amp;E) stained whole slides with clinical information from 78 patients. The slides were collected from the tissue bank of the Tri-Service General Hospital and the National Defense Medical Center, Taipei, Taiwan. Whole Slide Images (WSIs) were acquired with a digital slide scanner (Leica AT2) with a 20x objective lens. The dimension of the ovarian cancer slides is 54342x41048 in pixels and 27.34 x 20.66mm on average. <\/span><span style=\"letter-spacing: 0.0px;color: rgb(32,33,36);\">The bevacizumab treatment is effective in 162 and invalid in 126 of the dataset.\u00a0 <\/span><span style=\"letter-spacing: 0.0px;color: rgb(32,33,36);\">Ethical approvals have been obtained from the research ethics committee of the Tri-Service General Hospital (TSGHIRB No.1-107-05-171 and No.B202005070), and the data were de-identified and used for a retrospective study without impacting patient care.<\/span><\/p><p><span style=\"color: rgb(32,33,36);\">The clinicopathologic characteristics of patients were recorded by the data managers of the Gynecologic Oncology Center. Age, pre- and post-treatment serum CA-125 concentrations, histologic subtype, and recurrence, and survival status were recorded. A tumor, which is resistant to bevacizumab therapy, is defined as a measurable regrowth of the tumor or as a serum CA-125 concentration more than twice the value of the upper limit of normal during the treatment course for the bevacizumab therapy (i.e., the patient had the detectable disease or elevated CA-125 level following cytoreductive surgery combine with carboplatin\/paclitaxel plus bevacizumab). A tumor, which is sensitive to bevacizumab therapy, is defined as no measurable regrowth of the tumor or as a serum CA-125 concentration under than twice the value of the upper limit of normal during the treatment course for the bevacizumab therapy.<\/span><\/p><p><span style=\"color: rgb(32,33,36);\">This dataset is further described in the following publications:<\/span><\/p><ul><li>Wang et al.\u00a0<em>Weakly Supervised Deep Learning for Prediction of Treatment Effectiveness on Ovarian Cancer from Histopathology Images.<\/em> Computerized Medical Imaging and Graphics. <a href=\"https:\/\/gcc02.safelinks.protection.outlook.com\/?url=https%3A%2F%2Fdoi.org%2F10.1016%2Fj.compmedimag.2022.102093&amp;data=05%7C01%7Ckirbyju%40mail.nih.gov%7Ca1a4f263214846a156f908da58bd5e3c%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637919868422135484%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&amp;sdata=424GtHH8SDUEjvHtaXZvOwt9hcHaZgl36YHL1tzH6T4%3D&amp;reserved=0\" title=\"Original URL: https:\/\/doi.org\/10.1016\/j.compmedimag.2022.102093. Click or tap if you trust this link.\" class=\"external-link\" rel=\"nofollow\"><span style=\"color: rgb(12,125,187);text-decoration: none;\">https:\/\/doi.org\/10.1016\/j.compmedimag.2022.102093<\/span><\/a><\/li><li><span style=\"color: rgb(34,34,34);text-decoration: none;\">Wang, CW., Chang, CC., Khalil, M.A.\u00a0<\/span><em style=\"text-decoration: none;\">et al.<\/em><span style=\"color: rgb(34,34,34);text-decoration: none;\">\u00a0Histopathological whole slide image dataset for classification of treatment effectiveness to ovarian cancer.\u00a0<\/span><em style=\"text-decoration: none;\">Sci Data<\/em><span style=\"color: rgb(34,34,34);text-decoration: none;\">\u00a0<\/span><strong style=\"text-decoration: none;\">9,\u00a0<\/strong><span style=\"color: rgb(34,34,34);text-decoration: none;\">25 (2022). <\/span><a href=\"https:\/\/urldefense.proofpoint.com\/v2\/url?u=https-3A__doi.org_10.1038_s41597-2D022-2D01127-2D6&amp;d=DwMFaQ&amp;c=27AKQ-AFTMvLXtgZ7shZqsfSXu-Fwzpqk4BoASshREk&amp;r=8Cp6b3lxarmeusUZiM4iklR8j0cnPVpMQlwxcUdmg7k&amp;m=KjRC3m-rOnTtFH3XEslmJbahMx47rZ7sbWfCRe1mhyI&amp;s=eeVEaWhomepZyIOJlmiQmxPq7-u9VqwHAW8G-VAMcXw&amp;e=\" style=\"text-decoration: underline;\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1038\/s41597-022-01127-6<\/a><\/li><\/ul><h3 id=\"AdatasetofhistopathologicalwholeslideimagesforclassificationofTreatmenteffectivenesstoovariancancer(OvarianBevacizumabResponse)-Acknowledgements\"><span>Acknowledgements<\/span><\/h3><p><span style=\"color: rgb(0,0,0);\"><span style=\"text-decoration: none;\">This research study is supported by the Ministry of Science and Technology of Taiwan, under a grant (MOST-108-2221-E-011-070, MOST109-2221-E-011-018-MY3, 110-2321-B-016 -002), Tri-Service General Hospital, Taipei, Taiwan (TSGH-C-108086, TSGH-D-109094, TSGH-D-110036, and TSGH-801GB111010), and Tri-Service General Hospital-National Taiwan University of Science and Technology (TSGH-NTUST-111-05)<\/span><span style=\"text-decoration: none;\">.<\/span><\/span><\/p><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#8359307775d01956b8724889a5a26fe777070e47\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#8359307782fffd0a71ae4f36bc20f3f4e686c6fa\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#83593077a1d9b02566f14c2596dd148561481958\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#83593077f4ebb549734a4638a4b6b7b6d019f51b\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"8359307775d01956b8724889a5a26fe777070e47\" active=\"true\" name=\"Data Access\" ><h3 id=\"AdatasetofhistopathologicalwholeslideimagesforclassificationofTreatmenteffectivenesstoovariancancer(OvarianBevacizumabResponse)-DataAccess\">Data Access<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 87.359%;\"><colgroup><col style=\"width: 26.3689%;\"\/><col style=\"width: 52.8412%;\"\/><col style=\"width: 20.7414%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\"><span style=\"color: rgb(33,37,41);\">Tissue Slide Images (SVS, 253.8 GB)<\/span><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\">\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/faspex.cancerimagingarchive.net\/aspera\/faspex\/external_deliveries\/384?passcode=cb5318b4d9b5b38d2a5055f04f6ffe9aaa9c0c8b\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/pathdb.cancerimagingarchive.net\/imagesearch?f[0]=collection:ovarian_bevacizumab_response\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><br\/><br\/><span style=\"letter-spacing: 0.0px;\">(Download and apply the <\/span><a style=\"letter-spacing: 0.0px;\" href=\"https:\/\/www.ibm.com\/aspera\/connect\/\" class=\"external-link\" rel=\"nofollow\">IBM-Aspera-Connect plugin\u00a0<\/a><span style=\"letter-spacing: 0.0px;\">to your browser to retrieve this faspex package)\u00a0<\/span><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/4.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 4.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Clinical data (XLS)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/83593077\/new_CA125%20data_20230207.xlsx?version=2&amp;amp;modificationDate=1686851166874&amp;amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/83593077\/Final%20patient_list.xlsx?version=1&amp;modificationDate=1635347941808&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/4.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 4.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><p><span style=\"color: rgb(23,43,77);\">Please contact <a href=\"mailto:help@cancerimagingarchive.net\" class=\"external-link\" rel=\"nofollow\">help@cancerimagingarchive.net<\/a>\u00a0 with any questions regarding usage.<\/span><\/p><\/div><div class=\"tabs-pane \" id=\"8359307782fffd0a71ae4f36bc20f3f4e686c6fa\" name=\"Detailed Description\" ><h3 id=\"AdatasetofhistopathologicalwholeslideimagesforclassificationofTreatmenteffectivenesstoovariancancer(OvarianBevacizumabResponse)-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><p>Image Statistics<\/p><\/th><th class=\"confluenceTh\"><br\/><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td class=\"confluenceTd\"><p>Pathology<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Patients<\/p><\/td><td class=\"confluenceTd\"><p>78<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\"><p>285<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images Size (GB)<\/td><td colspan=\"1\" class=\"confluenceTd\">253.8<\/td><\/tr><\/tbody><\/table><\/div><p>Slides include 162 effective and 126 invalid images.<\/p><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"83593077a1d9b02566f14c2596dd148561481958\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"AdatasetofhistopathologicalwholeslideimagesforclassificationofTreatmenteffectivenesstoovariancancer(OvarianBevacizumabResponse)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy<\/h3><p><span>\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/span><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p style=\"margin-left: 0.0px;text-align: left;\">Wang, C.-W., Chang, C.-C., Lo, S.-C., Lin, Y.-J., Liou, Y.-A., Hsu, P.-C., Lee, Y.-C., &amp; Chao, T.-K. (2021). A dataset of histopathological whole slide images for classification of Treatment effectiveness to ovarian cancer (Ovarian Bevacizumab Response) (Version 2) [Data set]. The Cancer Imaging Archive. <a href=\"https:\/\/doi.org\/10.7937\/TCIA.985G-EY35\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/TCIA.985G-EY35<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p style=\"margin-left: auto;text-align: left;\">Wang, C.-W., Chang, C.-C., Lee, Y.-C., Lin, Y.-J., Lo, S.-C., Hsu, P.-C., Liou, Y.-A., Wang, C.-H., &amp; Chao, T.-K. (2022). Weakly Supervised Deep Learning for Prediction of Treatment Effectiveness on Ovarian Cancer from Histopathology Images. In Computerized Medical Imaging and Graphics (p. 102093). Elsevier BV. <a href=\"https:\/\/doi.org\/10.1016\/j.compmedimag.2022.102093\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1016\/j.compmedimag.2022.102093<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F.\u00a0<strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">10.1007\/s10278-013-9622-7<\/a><\/p><\/div><\/div><h3 id=\"AdatasetofhistopathologicalwholeslideimagesforclassificationofTreatmenteffectivenesstoovariancancer(OvarianBevacizumabResponse)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains\u00a0<\/span><a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\">a list of publications<\/a><span> which leverage TCIA data. <\/span> If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\"> contact the TCIA Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"83593077f4ebb549734a4638a4b6b7b6d019f51b\" name=\"Versions\" ><h3 id=\"AdatasetofhistopathologicalwholeslideimagesforclassificationofTreatmenteffectivenesstoovariancancer(OvarianBevacizumabResponse)-Version2(Current):Updated2023\/04\/26\">Version 2 (Current): Updated 2023\/04\/26<\/h3><div class=\"table-wrap\"><table class=\"fixed-width wrapped confluenceTable\"><colgroup><col style=\"width: 38.7467%;\"\/><col style=\"width: 61.2235%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><span>Data Type<\/span><\/th><th class=\"confluenceTh\"><span>Download all or Query\/Filter<\/span><\/th><\/tr><tr><td class=\"confluenceTd\"><span>Tissue Slide Images (SVS, 253.8 GB)<\/span><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\">\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/faspex.cancerimagingarchive.net\/aspera\/faspex\/external_deliveries\/384?passcode=cb5318b4d9b5b38d2a5055f04f6ffe9aaa9c0c8b\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/pathdb.cancerimagingarchive.net\/imagesearch?f[0]=collection:ovarian_bevacizumab_response\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><p><span>(Download and apply the <\/span><a href=\"https:\/\/www.ibm.com\/aspera\/connect\/\" class=\"external-link\" rel=\"nofollow\">IBM-Aspera-Connect plugin\u00a0<\/a><span>to your browser to retrieve this faspex package)\u00a0<\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\"><span>Clinical Data (XLS)<\/span><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/83593077\/new_CA125%20data_20230207.xlsx?version=2&amp;amp;modificationDate=1686851166874&amp;amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/83593077\/Final%20patient_list.xlsx?version=1&amp;modificationDate=1635347941808&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><p><br\/><\/p><\/td><\/tr><\/tbody><\/table><\/div><p class=\"p1\">update: 2 files (414056O.svs and 414056P.svs) removed from folder e12. 1 file (220725D.svs) moved from folder in4 to e12. metadata spreadsheet &quot;Final CA125 data.xlsx&quot; updated with clinical information previously missing.<\/p><h3 id=\"AdatasetofhistopathologicalwholeslideimagesforclassificationofTreatmenteffectivenesstoovariancancer(OvarianBevacizumabResponse)-Version1:Updated2021\/05\/24\">Version 1: Updated 2021\/05\/24<\/h3><div class=\"table-wrap\"><table class=\"wrapped fixed-width confluenceTable\" style=\"width: 44.6732%;\"><colgroup><col style=\"width: 38.7467%;\"\/><col style=\"width: 61.2235%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><span>Data Type<\/span><\/th><th class=\"confluenceTh\"><span>Download all or Query\/Filter<\/span><\/th><\/tr><tr><td class=\"confluenceTd\"><span>Tissue Slide Images (SVS, 253.8 GB)<\/span><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\">\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/faspex.cancerimagingarchive.net\/aspera\/faspex\/external_deliveries\/221?passcode=15bbd6ad41dc98fff70949c70f4b9ef55c954cca\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/pathdb.cancerimagingarchive.net\/imagesearch?f[0]=collection:ovarian_bevacizumab_response\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><p><span>(Download and apply the <\/span><a href=\"https:\/\/www.ibm.com\/aspera\/connect\/\" class=\"external-link\" rel=\"nofollow\">IBM-Aspera-Connect plugin\u00a0<\/a><span>to your browser to retrieve this faspex package)\u00a0<\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\"><span>Clinical Data (XLS)<\/span><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/83593077\/Final%20CA125%20data.xlsx?version=1&amp;modificationDate=1635173486180&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/83593077\/Final%20patient_list.xlsx?version=1&amp;modificationDate=1635347941808&amp;api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><p><br\/><\/p><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><p><br\/><\/p><p><br\/><\/p>","versions":false,"additional_resources":"","cancer_locations":["Ovary"],"collection_page_accessibility":"Public","publications_related":"","version_change_log":"","version_change_log_archived":"","analysis_results":"","collection_status":"Complete","publications_using":"TCIA maintains\u00a0<a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a> which leverage TCIA data.  If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact the TCIA Helpdesk<\/a>.","species":["Human"],"collection_title":"A dataset of histopathological whole slide images for classification of Treatment effectiveness to ovarian cancer","detailed_description":"Slides include 162 effective and 126 invalid images.\n<br\/>","related_analysis_results":false,"subjects":"288","collection_short_title":"Ovarian Bevacizumab Response","data_types":["Pathology"],"date_updated":"2023-09-13","collection_browse_title":"","supporting_data":["Clinical"],"collection_featured_image":{"ID":"7613","post_author":"6","post_date":"2023-09-13 03:35:56","post_date_gmt":"2023-09-13 03:35:56","post_content":"","post_title":"ob-response","post_excerpt":"","post_status":"inherit","comment_status":"open","ping_status":"closed","post_password":"","post_name":"ob-response","to_ping":"","pinged":"","post_modified":"2023-09-13 11:55:48","post_modified_gmt":"2023-09-13 11:55:48","post_content_filtered":"","post_parent":"5525","guid":"https:\/\/cm.vastapps.dev\/wp-content\/uploads\/ob-response.png","menu_order":"0","post_type":"attachment","post_mime_type":"image\/png","comment_count":"0","pod_item_id":"7613"},"collection_summary":"Despite the progress made during the last two decades in the surgery and chemotherapy of ovarian cancer, more than 70% of advanced patients are with recurrent cancer and decease. Bevacizumab has been recently approved by FDA as a monotherapy for advanced ovarian cancer in combination with chemotherapy. Considering the cost, potential toxicity, and finding that only a portion of patients will benefit from these drugs, the identification of a new predictive method for the treatment of ovarian cancer remains an urgent unmet medical need. Prediction of therapeutic effects and individualization of therapeutic strategies are critical, but to the authors' best knowledge, there are no effective biomarkers that can be used to predict patient response to bevacizumab treatment for ovarian cancer. This dataset helps researchers to explore and develop methods to predict the therapeutic effect of patients with epithelial ovarian cancer to bevacizumab.<p>The dataset consists of de-identified 288 hematoxylin and eosin (H&amp;E) stained whole slides with clinical information from 78 patients. The slides were collected from the tissue bank of the Tri-Service General Hospital and the National Defense Medical Center, Taipei, Taiwan. Whole Slide Images (WSIs) were acquired with a digital slide scanner (Leica AT2) with a 20x objective lens. The dimension of the ovarian cancer slides is 54342x41048 in pixels and 27.34 x 20.66mm on average. The bevacizumab treatment is effective in 162 and invalid in 126 of the dataset.\u00a0 Ethical approvals have been obtained from the research ethics committee of the Tri-Service General Hospital (TSGHIRB No.1-107-05-171 and No.B202005070), and the data were de-identified and used for a retrospective study without impacting patient care.<\/p><p>The clinicopathologic characteristics of patients were recorded by the data managers of the Gynecologic Oncology Center. Age, pre- and post-treatment serum CA-125 concentrations, histologic subtype, and recurrence, and survival status were recorded. A tumor, which is resistant to bevacizumab therapy, is defined as a measurable regrowth of the tumor or as a serum CA-125 concentration more than twice the value of the upper limit of normal during the treatment course for the bevacizumab therapy (i.e., the patient had the detectable disease or elevated CA-125 level following cytoreductive surgery combine with carboplatin\/paclitaxel plus bevacizumab). A tumor, which is sensitive to bevacizumab therapy, is defined as no measurable regrowth of the tumor or as a serum CA-125 concentration under than twice the value of the upper limit of normal during the treatment course for the bevacizumab therapy.<\/p><p>This dataset is further described in the following publications:<\/p><ul><li>Wang et al.\u00a0<em>Weakly Supervised Deep Learning for Prediction of Treatment Effectiveness on Ovarian Cancer from Histopathology Images.<\/em> Computerized Medical Imaging and Graphics. <a href=\"https:\/\/gcc02.safelinks.protection.outlook.com\/?url=https%3A%2F%2Fdoi.org%2F10.1016%2Fj.compmedimag.2022.102093&amp;data=05%7C01%7Ckirbyju%40mail.nih.gov%7Ca1a4f263214846a156f908da58bd5e3c%7C14b77578977342d58507251ca2dc2b06%7C0%7C0%7C637919868422135484%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&amp;sdata=424GtHH8SDUEjvHtaXZvOwt9hcHaZgl36YHL1tzH6T4%3D&amp;reserved=0\" title=\"Original URL: https:\/\/doi.org\/10.1016\/j.compmedimag.2022.102093. Click or tap if you trust this link.\">https:\/\/doi.org\/10.1016\/j.compmedimag.2022.102093<\/a><\/li><li>Wang, CW., Chang, CC., Khalil, M.A.\u00a0<em>et al.<\/em>\u00a0Histopathological whole slide image dataset for classification of treatment effectiveness to ovarian cancer.\u00a0<em>Sci Data<\/em>\u00a0<strong>9,\u00a0<\/strong>25 (2022). <a href=\"https:\/\/urldefense.proofpoint.com\/v2\/url?u=https-3A__doi.org_10.1038_s41597-2D022-2D01127-2D6&amp;d=DwMFaQ&amp;c=27AKQ-AFTMvLXtgZ7shZqsfSXu-Fwzpqk4BoASshREk&amp;r=8Cp6b3lxarmeusUZiM4iklR8j0cnPVpMQlwxcUdmg7k&amp;m=KjRC3m-rOnTtFH3XEslmJbahMx47rZ7sbWfCRe1mhyI&amp;s=eeVEaWhomepZyIOJlmiQmxPq7-u9VqwHAW8G-VAMcXw&amp;e=\">https:\/\/doi.org\/10.1038\/s41597-022-01127-6<\/a><\/li><\/ul>","collection_acknowledgements":"This research study is supported by the Ministry of Science and Technology of Taiwan, under a grant (MOST-108-2221-E-011-070, MOST109-2221-E-011-018-MY3, 110-2321-B-016 -002), Tri-Service General Hospital, Taipei, Taiwan (TSGH-C-108086, TSGH-D-109094, TSGH-D-110036, and TSGH-801GB111010), and Tri-Service General Hospital-National Taiwan University of Science and Technology (TSGH-NTUST-111-05).\n<br\/>","collection_funding":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections\/5525"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/collections"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_collection"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media\/7613"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5525"}],"wp:term":[{"taxonomy":"tcia_citation_tax","embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/v1\/citation-tax?post=5525"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}