{"id":5806,"date":"2023-09-04T03:39:15","date_gmt":"2023-09-04T03:39:15","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-analysis-result\/prostatex-seg-zones\/"},"modified":"2023-09-13T12:11:38","modified_gmt":"2023-09-13T12:11:38","slug":"prostatex-seg-zones","status":"publish","type":"tcia_analysis_result","link":"https:\/\/cm.vastapps.dev\/tcia-analysis-result\/prostatex-seg-zones\/","title":{"rendered":"PROSTATEX-SEG-ZONES"},"featured_media":8793,"template":"","cancer_types":["Prostate"],"citations":[4830,4831,2925],"full_export":"<h1 id=\"PROSTATExZoneSegmentations(PROSTATExSegZones)-Summary\">Summary<\/h1><span class=\"confluence-embedded-file-wrapper image-right-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-content-image-border image-right\" draggable=\"false\" alt=\"Example case in axial and sagittal view with corresponding zone segmentation. The 4-class segmentation consists of peripheral zone (pink), transitional zone (yellow), anterior fibromuscular stroma (blue)  and distal prostatic urethra (brown)\" width=\"426\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/PROSTATEx%20Zone%20Segmentations%20(PROSTATEx-Seg-Zones)\/example_segmentation_20201120.PNG?api=v2\"><\/span><p>This collection contains prostate\u2019s zonal segmentation for 98 cases randomly selected from the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/pages\/viewpage.action?pageId=23691656\">SPIE-AAPM-NCI PROSTATEx Challenges (PROSTATEx)<\/a>. The four-class segmentation encompasses the peripheral zone, transition zone, fibromuscular stroma and the distal prostatic urethra. As underlying images, we used transversal T2w scans. Segmentations were created by a medical student with experience in prostate segmentation and an expert urologist who instructed the student and double-checked the segmentations in the end. The DICOM representation of these segmentations were generated with <em><a href=\"https:\/\/github.com\/QIICR\/dcmqi\" class=\"external-link\" rel=\"nofollow\">dcmqi<\/a><\/em>.<\/p><p><span style=\"font-size: 16.0px;font-weight: bold;letter-spacing: -0.006em;background-color: rgb(255,255,255);\">Acknowledgements<\/span><\/p><p>This work has been funded by the EU and the federal state of Saxony-Anhalt, Germany under grant number ZS\/2016\/08\/80388. We would like to thank the authors of the PROSTATEx challenge for providing this valuable dataset.<br\/><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#70230177aebf48bd2e0842e1b2074884b0bc7823\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#7023017716892cb4ed884b81b1045129e810abf1\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#702301773f7a515cff1f4f51b6bbbf14d8783fac\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#70230177e95d59823bcd4cc19debf0163382c951\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"70230177aebf48bd2e0842e1b2074884b0bc7823\" active=\"true\" name=\"Data Access\" ><h3 id=\"PROSTATExZoneSegmentations(PROSTATExSegZones)-DataAccess\">Data Access<\/h3><div class=\"table-wrap\"><table class=\"wrapped relative-table confluenceTable\" style=\"width: 51.5936%;\"><colgroup><col style=\"width: 32.4639%;\"\/><col style=\"width: 38.9788%;\"\/><col style=\"width: 28.5247%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\"><p>License<\/p><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Segmentations (DICOM, 143 MB)<\/p><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70230177\/ProstateX%20Zone%20Segmentations%20manifest_20201125.tcia?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;DateRange=11\/01\/2020-11\/06\/2020&amp;CollectionCriteria=PROSTATEx&amp;ThirdPartyCriteria=YES\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><\/p><p class=\"auto-cursor-target\"><span style=\"color: rgb(33,37,41);\">(Requires\u00a0<\/span><a rel=\"nofollow\" style=\"text-decoration: none;text-align: left;\" href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a><span style=\"color: rgb(33,37,41);\">.<\/span><span style=\"color: rgb(33,37,41);\">)<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p>Click the Versions tab for more info about data releases.<\/p><h4 style=\"text-align: left;\" id=\"PROSTATExZoneSegmentations(PROSTATExSegZones)-CollectionsUsedinthisThirdPartyAnalysis\"><strong><span style=\"color: rgb(23,43,77);\"><span style=\"color: rgb(29,28,29);text-decoration: none;\">Collections Used in this Third Party Analysis<\/span><\/span><\/strong><\/h4><p class=\"auto-cursor-target\"><span style=\"color: rgb(23,43,77);\"><span style=\"color: rgb(29,28,29);text-decoration: none;\">Below is a list of the Collections used in these analyses:<\/span><\/span><\/p><div class=\"table-wrap\"><table class=\"relative-table wrapped confluenceTable\" style=\"width: 51.0335%;\"><colgroup><col style=\"width: 29.1143%;\"\/><col style=\"width: 42.0149%;\"\/><col style=\"width: 28.8396%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Source Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Corresponding Original MR Images from<a href=\"https:\/\/doi.org\/10.7937\/K9TCIA.2017.MURS5CL\" class=\"external-link\" rel=\"nofollow\"> PROSTATEx<\/a> (DICOM, 558 MB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70230177\/ProstateX%20Zone%20Segmentations%20Corresponding%20Orignial%20files%20manifest_20201125.tcia?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><p class=\"auto-cursor-target\"><span style=\"color: rgb(33,37,41);\">(Requires\u00a0<\/span><a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\" style=\"text-decoration: none;text-align: left;\">NBIA Data Retriever<\/a><span style=\"color: rgb(33,37,41);\">.<\/span><span style=\"color: rgb(33,37,41);\">)<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p class=\"auto-cursor-target\"><span style=\"color: rgb(23,43,77);\">Please contact <a href=\"mailto:help@cancerimagingarchive.net\" rel=\"nofollow\" class=\"external-link\">help@cancerimagingarchive.net<\/a>\u00a0 with any questions regarding usage.<\/span><\/p><\/div><div class=\"tabs-pane \" id=\"7023017716892cb4ed884b81b1045129e810abf1\" name=\"Detailed Description\" ><h3 id=\"PROSTATExZoneSegmentations(PROSTATExSegZones)-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup><col\/><col\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><p>Image Statistics<\/p><\/th><th class=\"confluenceTh\"><br\/><\/th><\/tr><tr><td class=\"confluenceTd\"><p>Modalities<\/p><\/td><td class=\"confluenceTd\"><p>SEG<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Patients<\/p><\/td><td class=\"confluenceTd\"><p>98<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td class=\"confluenceTd\"><p>98<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td class=\"confluenceTd\"><p>98<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\"><p>98<\/p><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Images Size (MB)<\/td><td colspan=\"1\" class=\"confluenceTd\">143<\/td><\/tr><\/tbody><\/table><\/div><\/div><div class=\"tabs-pane \" id=\"702301773f7a515cff1f4f51b6bbbf14d8783fac\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"PROSTATExZoneSegmentations(PROSTATExSegZones)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy<\/h3><p>\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(102,102,102);\">Meyer, A., Schindele, D., von Reibnitz, D., Rak, M., Schostak, M., &amp; Hansen, C. (2020). PROSTATEx Zone Segmentations [Data set]. The Cancer Imaging Archive. <a href=\"https:\/\/doi.org\/10.7937\/TCIA.NBB4-4655\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/TCIA.NBB4-4655<\/a><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Meyer, A., Rakr, M., Schindele, D., Blaschke, S., Schostak, M., Fedorov, A., &amp; Hansen, C. (2019, April).<strong> Towards Patient-Individual PI-Rads v2 Sector Map: Cnn for Automatic Segmentation of Prostatic Zones From T2-Weighted MRI<\/strong>. 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019). 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI). <a href=\"https:\/\/doi.org\/10.1109\/isbi.2019.8759572\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1109\/isbi.2019.8759572<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F.\u00a0<strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">10.1007\/s10278-013-9622-7<\/a><\/p><\/div><\/div><h3 id=\"PROSTATExZoneSegmentations(PROSTATExSegZones)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains\u00a0<\/span><a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\">a list of publications<\/a><span> which leverage TCIA data. <\/span> If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\"> contact the TCIA Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"70230177e95d59823bcd4cc19debf0163382c951\" name=\"Versions\" ><h3 id=\"PROSTATExZoneSegmentations(PROSTATExSegZones)-Version1(Current):2020\/11\/25\">Version 1 (Current):\u00a0 2020\/11\/25<\/h3><div class=\"table-wrap\"><table class=\"wrapped fixed-table confluenceTable\"><colgroup><col style=\"width: 547.0px;\"\/><col style=\"width: 403.0px;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\"><span>Data Type<\/span><\/th><th class=\"confluenceTh\"><span>Download all or Query\/Filter<\/span><\/th><\/tr><tr><td class=\"confluenceTd\">Segmentations (DICOM, 143 MB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70230177\/ProstateX%20Zone%20Segmentations%20manifest_20201125.tcia?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;DateRange=11\/25\/2020-11\/25\/2020&amp;CollectionCriteria=PROSTATEx&amp;ThirdPartyCriteria=YES\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Corresponding Original MR Images from PROSTATEx (DICOM, 558 MB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/70230177\/ProstateX%20Zone%20Segmentations%20Corresponding%20Orignial%20files%20manifest_20201125.tcia?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p><p><br\/><\/p>","make_new_version_button":"","related_collections":false,"result_doi":"10.7937\/TCIA.NBB4-4655","versions":false,"cancer_locations":["Prostate"],"publications_related":"","result_download_info":"Click the Versions tab for more info about data releases.","result_downloads":[5457],"result_page_accessibility":"Public","version_change_log_archived":"","additional_resources":"","date_updated":"2020-11-30","publications_using":"TCIA maintains\u00a0<a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a> which leverage TCIA data.  If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact the TCIA Helpdesk<\/a>.","result_title":"PROSTATEx Zone Segmentations","subjects":"98","detailed_description":"","result_short_title":"PROSTATEx-Seg-Zones","supporting_data":["Organ segmentations"],"version_change_log":"","collections":"Below is a list of the Collections used in these analyses:\n<table><colgroup><col\/><col\/><col\/><\/colgroup><tbody><tr><th>Source Data Type<\/th><th>Download all or Query\/Filter<\/th><th>License<\/th><\/tr><tr><td>Corresponding Original MR Images from<a href=\"https:\/\/doi.org\/10.7937\/K9TCIA.2017.MURS5CL\"> PROSTATEx<\/a> (DICOM, 558 MB)<\/td><td><div><p>\n<a download=\"\" href=\"\/wp-content\/uploads\/ProstateX-Zone-Segmentations-Corresponding-Orignial-files-manifest_20201125.tcia\" target=\"_blank\"><button><i> <\/i> Download<\/button><\/a>\u00a0\n<\/p><p>(Requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a>.)<\/p><\/div><\/td><td><div><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table>\nPlease contact <a href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a>\u00a0 with any questions regarding usage.","result_browse_title":"","version_number":[],"collection_downloads":[5864],"result_summary":"<p>This collection contains prostate\u2019s zonal segmentation for 98 cases randomly selected from the <a href=\"\/pages\/viewpage.action?pageId=23691656\">SPIE-AAPM-NCI PROSTATEx Challenges (PROSTATEx)<\/a>. The four-class segmentation encompasses the peripheral zone, transition zone, fibromuscular stroma and the distal prostatic urethra. As underlying images, we used transversal T2w scans. Segmentations were created by a medical student with experience in prostate segmentation and an expert urologist who instructed the student and double-checked the segmentations in the end. The DICOM representation of these segmentations were generated with <em><a href=\"https:\/\/github.com\/QIICR\/dcmqi\">dcmqi<\/a><\/em>.<\/p>\nAcknowledgements\nThis work has been funded by the EU and the federal state of Saxony-Anhalt, Germany under grant number ZS\/2016\/08\/80388. We would like to thank the authors of the PROSTATEx challenge for providing this valuable dataset.<br\/><br\/>","result_featured_image":{"ID":"8793","post_author":"6","post_date":"2023-09-13 04:25:08","post_date_gmt":"2023-09-13 04:25:08","post_content":"","post_title":"example_segmentation_20201120","post_excerpt":"","post_status":"inherit","comment_status":"open","ping_status":"closed","post_password":"","post_name":"example_segmentation_20201120","to_ping":"","pinged":"","post_modified":"2023-09-13 12:11:38","post_modified_gmt":"2023-09-13 12:11:38","post_content_filtered":"","post_parent":"5806","guid":"https:\/\/cm.vastapps.dev\/wp-content\/uploads\/example_segmentation_20201120.png","menu_order":"0","post_type":"attachment","post_mime_type":"image\/png","comment_count":"0","pod_item_id":"8793"},"result_acknowledgements":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/analysis-results\/5806"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/analysis-results"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_analysis_result"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media\/8793"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5806"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}