{"id":5793,"date":"2023-09-04T03:38:14","date_gmt":"2023-09-04T03:38:14","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-analysis-result\/prostatex-seg-hires\/"},"modified":"2023-09-13T12:10:46","modified_gmt":"2023-09-13T12:10:46","slug":"prostatex-seg-hires","status":"publish","type":"tcia_analysis_result","link":"https:\/\/cm.vastapps.dev\/tcia-analysis-result\/prostatex-seg-hires\/","title":{"rendered":"PROSTATEX-SEG-HIRES"},"featured_media":8732,"template":"","cancer_types":["Prostate"],"citations":[4792,4793,2925],"full_export":"<h2 id=\"HighResolutionProstateSegmentationsfortheProstateXChallenge(PROSTATExSegHiRes)-Summary\">Summary<\/h2><p><span class=\"confluence-embedded-file-wrapper image-right-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image image-right\" draggable=\"false\" alt=\"Example of a high resolution segmentation. The segmentation is smooth in all directions and does not suffer from step artifacts\" height=\"250\" width=\"456\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/High%20Resolution%20Prostate%20Segmentations%20for%20the%20ProstateX-Challenge%20(PROSTATEx-Seg-HiRes)\/High%20Resolution.JPG?api=v2\"><\/span><\/p><p style=\"text-align: left;\">We created 66 high resolution segmentations for randomly chosen T2-weighted volumes of the\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/pages\/viewpage.action?pageId=23691656\">SPIE-AAPM-NCI PROSTATEx Challenges (PROSTATEx)<\/a>. The high\u00a0<span style=\"background-color: rgb(255,255,255);letter-spacing: 0.0px;\">resolution segmentations were obtained\u00a0<\/span><span style=\"letter-spacing: 0.0px;background-color: rgb(255,255,255);\">by\u00a0<\/span><span style=\"background-color: rgb(255,255,255);letter-spacing: 0.0px;\">considering the three scan directions: for each scan direction (axial, sagittal, coronal),\u00a0<\/span><span style=\"background-color: rgb(255,255,255);letter-spacing: 0.0px;\">the gland was manually delineated by a medical student, followed\u00a0<\/span><span style=\"background-color: rgb(255,255,255);letter-spacing: 0.0px;\">by a review and corrections of an expert urologist.\u00a0<\/span><span style=\"background-color: rgb(255,255,255);letter-spacing: 0.0px;\">These three anisotropic segmentations were fused to one isotropic segmentation by means of shape-based interpolation\u00a0<\/span><span style=\"background-color: rgb(255,255,255);letter-spacing: 0.0px;\">in the following manner: (1) The signed distance transformation of the three segmentations is computed.\u00a0<\/span><span style=\"background-color: rgb(255,255,255);letter-spacing: 0.0px;\">(2) The anisotropic distance volumes are transformed into an isotropic high-resolution representation with linear interpolation. (3) By averaging the distances, smoothing and thresholding them at zero, we obtained the fused segmentation. <\/span><span style=\"background-color: rgb(255,255,255);letter-spacing: 0.0px;\">The resulting segmentations were manually verified and corrected further by the expert urologist if necessary.\u00a0<\/span><span style=\"background-color: rgb(255,255,255);letter-spacing: 0.0px;\">Serving as ground truth for training CNNs, these segmentations have the potential to improve the segmentation accuracy of automated algorithms. By considering not only the axial scans but also sagittal and coronal scan directions, we aimed to have higher fidelity of the segmentations especially at the apex and base regions of the prostate.<\/span><\/p><p style=\"text-align: left;\">The segmentations to standard DICOM representation were created with <em> <a href=\"https:\/\/github.com\/QIICR\/dcmqi\" class=\"external-link\" rel=\"nofollow\">dcmqi<\/a> <\/em>.<\/p><p><span style=\"color: rgb(0,0,0);\"><strong style=\"text-align: left;\">Acknowledgements<\/strong><\/span><\/p><ul><li><span style=\"color: rgb(0,0,0);\">This work has been funded by the EU and the federal state of Saxony-Anhalt, Germany under grant number ZS\/2016\/08\/80388.<\/span><\/li><\/ul><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#6108077922b65588298d468d9374e2efcff016e0\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#61080779059cba7e1bc1499492366afeff418e56\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#61080779909e92547b61480ba16cadf0084a481a\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#6108077969c68630d9a64beaa96abff918937294\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"6108077922b65588298d468d9374e2efcff016e0\" active=\"true\" name=\"Data Access\" ><h3 id=\"HighResolutionProstateSegmentationsfortheProstateXChallenge(PROSTATExSegHiRes)-DataAccess\"><span style=\"color: rgb(23,43,77);\">Data Access<\/span><\/h3><div class=\"table-wrap\"><table class=\"relative-table wrapped confluenceTable\" style=\"width: 51.6331%;\"><colgroup><col style=\"width: 25.2964%;\"\/><col style=\"width: 46.1752%;\"\/><col style=\"width: 28.4951%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Segmentations (DICOM,\u00a00.119 GB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><br\/>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/61080779\/High%20Resolution%20Prostate%20Segmentations%20for%20the%20ProstateX-Challenge-NBIA-manifest_20200917.tcia?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/public.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;DateRange=09\/10\/2020-09\/11\/2020&amp;CollectionCriteria=PROSTATEx&amp;ThirdPartyCriteria=YES\" class=\"external-link\" rel=\"nofollow\"><button class=\"tcia-btn tcia-search-color\"><i class=\"fa fa-search\" \/> Search<\/button><\/a>\u00a0\n<\/span><\/p><p class=\"auto-cursor-target\"><span style=\"color: rgb(33,37,41);\">(Requires\u00a0<\/span><a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\" style=\"text-decoration: none;text-align: left;\">NBIA Data Retriever<\/a><span style=\"color: rgb(33,37,41);\">.<\/span><span style=\"color: rgb(33,37,41);\">)<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p class=\"auto-cursor-target\"><span style=\"color: rgb(33,37,41);\">Click the Versions tab for more info about data releases.<\/span><\/p><p class=\"auto-cursor-target\">Please contact <a href=\"mailto:help@cancerimagingarchive.net\" class=\"external-link\" rel=\"nofollow\">help@cancerimagingarchive.net<\/a>\u00a0 with any questions regarding usage.<\/p><h4 style=\"text-align: left;\" id=\"HighResolutionProstateSegmentationsfortheProstateXChallenge(PROSTATExSegHiRes)-CollectionsUsedinthisThirdPartyAnalysis\"><strong><span style=\"color: rgb(23,43,77);\"><span style=\"color: rgb(29,28,29);text-decoration: none;\">Collections Used in this Third Party Analysis<\/span><\/span><\/strong><\/h4><p style=\"text-align: left;\"><span style=\"color: rgb(23,43,77);\"><br style=\"text-decoration: none;text-align: left;\"\/><span style=\"color: rgb(29,28,29);text-decoration: none;\">Below is a list of the Collections used in these analyses:<\/span><\/span><\/p><div class=\"table-wrap\"><table class=\"relative-table wrapped confluenceTable\" style=\"width: 56.5343%;\"><colgroup><col style=\"width: 32.8912%;\"\/><col style=\"width: 41.0531%;\"\/><col style=\"width: 26.0232%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Source Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Corresponding Original MR Images from <a href=\"https:\/\/doi.org\/10.7937\/K9TCIA.2017.MURS5CL\" class=\"external-link\" rel=\"nofollow\">PROSTATEx<\/a> (DICOM, 371.21 MB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n\n<span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\">\n   <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/61080779\/ProstateX-Original%20MR%20Images-NBIA-manifest_20200917.tcia?api=v2\" rel=\"nofollow\"><button class=\"tcia-btn tcia-download-color\"><i class=\"fa fa-cloud-download\" \/> Download<\/button><\/a>\u00a0\n<\/span><\/p><p class=\"auto-cursor-target\"><span style=\"color: rgb(33,37,41);\">(Requires\u00a0<\/span><a style=\"text-decoration: none;text-align: left;\" href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\">NBIA Data Retriever<\/a><span style=\"color: rgb(33,37,41);\">.<\/span><span style=\"color: rgb(33,37,41);\">)<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><div class=\"tabs-pane \" id=\"61080779059cba7e1bc1499492366afeff418e56\" name=\"Detailed Description\" ><h3 id=\"HighResolutionProstateSegmentationsfortheProstateXChallenge(PROSTATExSegHiRes)-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup> <col\/> <col\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\">Image Statistics<\/th><th class=\"confluenceTh\"><br\/><\/th><\/tr><tr><td class=\"confluenceTd\">Modalities<\/td><td style=\"text-align: center;\" class=\"confluenceTd\">SEG<\/td><\/tr><tr><td class=\"confluenceTd\">Number of Patients<\/td><td style=\"text-align: center;\" class=\"confluenceTd\">66<\/td><\/tr><tr><td class=\"confluenceTd\">Number of Studies<\/td><td style=\"text-align: center;\" class=\"confluenceTd\">66<\/td><\/tr><tr><td class=\"confluenceTd\">Number of Series<\/td><td style=\"text-align: center;\" class=\"confluenceTd\">66<\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td style=\"text-align: center;\" class=\"confluenceTd\">66<\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Image Size (GB)<\/td><td style=\"text-align: center;\" colspan=\"1\" class=\"confluenceTd\">0.119<\/td><\/tr><\/tbody><\/table><\/div><\/div><div class=\"tabs-pane \" id=\"61080779909e92547b61480ba16cadf0084a481a\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"HighResolutionProstateSegmentationsfortheProstateXChallenge(PROSTATExSegHiRes)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy\u00a0<\/h3><p class=\"auto-cursor-target\">\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><span style=\"color: rgb(51,51,51);\">Schindele, D., Meyer, A., Von Reibnitz, D. F., Kiesswetter, V., Schostak, M., Rak, M., &amp; Hansen, C. (2020). <strong>High Resolution Prostate Segmentations for the ProstateX-Challenge [Data set]<\/strong>. The Cancer Imaging Archive. <a href=\"https:\/\/doi.org\/10.7937\/TCIA.2019.DEG7ZG1U\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/TCIA.2019.DEG7ZG1U<\/a> <\/span><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p class=\"EndNoteBibliography\"><span style=\"color: rgb(102,102,102);\">Meyer, A., Chlebus, G., Rak, M., Schindele, D., Schostak, M., van Ginneken, B., Schenk, A., Meine, H., Hahn, H. K., Schreiber, A., &amp; Hansen, C. (2020). Anisotropic 3D Multi-Stream CNN for Accurate Prostate Segmentation from Multi-Planar MRI. Computer Methods and Programs in Biomedicine, 105821. <a href=\"https:\/\/doi.org\/10.1016\/j.cmpb.2020.105821\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1016\/j.cmpb.2020.105821<\/a><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F.\u00a0T<strong>he Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: <span class=\"u-clearfix c-bibliographic-information__value\"> <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">10.1007\/s10278-013-9622-7<\/a> <\/span><\/p><\/div><\/div><h3 id=\"HighResolutionProstateSegmentationsfortheProstateXChallenge(PROSTATExSegHiRes)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains <\/span> <a class=\"external-link\" rel=\"nofollow\" href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a> <span> that leverage TCIA data. <\/span> If you have a manuscript you'd like to add please <a class=\"external-link\" rel=\"nofollow\" href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact the TCIA Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"6108077969c68630d9a64beaa96abff918937294\" name=\"Versions\" ><h3 id=\"HighResolutionProstateSegmentationsfortheProstateXChallenge(PROSTATExSegHiRes)-Version1(Current):2020\/09\/18\">Version 1 (Current): 2020\/09\/18<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup> <col\/> <col\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Segmentations (DICOM,\u00a00.119 GB)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/61080779\/High%20Resolution%20Prostate%20Segmentations%20for%20the%20ProstateX-Challenge-NBIA-manifest_20200917.tcia?version=1&amp;modificationDate=1600375602061&amp;api=v2\" data-linked-resource-id=\"70229188\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"High Resolution Prostate Segmentations for the ProstateX-Challenge-NBIA-manifest_20200917.tcia\" data-linked-resource-content-type=\"application\/x-nbia-manifest-file\" data-linked-resource-container-id=\"61080779\" data-linked-resource-container-version=\"89\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/High%20Resolution%20Prostate%20Segmentations%20for%20the%20ProstateX-Challenge%20(PROSTATEx-Seg-HiRes)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a>\u00a0 \u00a0\u00a0<a href=\"https:\/\/nbia.cancerimagingarchive.net\/nbia-search\/?MinNumberOfStudiesCriteria=1&amp;DateRange=09\/17\/2020-09\/18\/2020&amp;CollectionCriteria=PROSTATEx&amp;ThirdPartyCriteria=YES\" class=\"external-link\" rel=\"nofollow\"><span class=\"confluence-embedded-file-wrapper\"><img class=\"confluence-embedded-image confluence-external-resource\" draggable=\"false\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/2621477\/tcia_wiki_search_button.png?version=1&amp;modificationDate=1450207093851&amp;api=v2\" data-image-src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/2621477\/tcia_wiki_search_button.png?version=1&amp;modificationDate=1450207093851&amp;api=v2\"><\/span><\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Corresponding Original MR Images from PROSTATEx (DICOM, 371.21 MB)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/61080779\/ProstateX-Original%20MR%20Images-NBIA-manifest_20200917.tcia?version=1&amp;modificationDate=1600351118177&amp;api=v2\" data-linked-resource-id=\"70229098\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"ProstateX-Original MR Images-NBIA-manifest_20200917.tcia\" data-linked-resource-content-type=\"application\/x-nbia-manifest-file\" data-linked-resource-container-id=\"61080779\" data-linked-resource-container-version=\"89\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/High%20Resolution%20Prostate%20Segmentations%20for%20the%20ProstateX-Challenge%20(PROSTATEx-Seg-HiRes)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a>\u00a0 \u00a0\u00a0<\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div>","make_new_version_button":"","related_collections":false,"result_doi":"10.7937\/TCIA.2019.DEG7ZG1U","versions":false,"cancer_locations":["Prostate"],"publications_related":"","result_download_info":"Click the Versions tab for more info about data releases.\nPlease contact <a href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a>\u00a0 with any questions regarding usage.","result_downloads":[5427],"result_page_accessibility":"Public","version_change_log_archived":"","additional_resources":"","date_updated":"2020-09-22","publications_using":"TCIA maintains  <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a>  that leverage TCIA data.  If you have a manuscript you'd like to add please <a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact the TCIA Helpdesk<\/a>.","result_title":"High Resolution Prostate Segmentations for the ProstateX-Challenge","subjects":"66","detailed_description":"","result_short_title":"PROSTATEx-Seg-HiRes","supporting_data":["Organ segmentations"],"version_change_log":"","collections":"<br\/>Below is a list of the Collections used in these analyses:\n<table><colgroup><col\/><col\/><col\/><\/colgroup><tbody><tr><th>Source Data Type<\/th><th>Download all or Query\/Filter<\/th><th>License<\/th><\/tr><tr><td>Corresponding Original MR Images from <a href=\"https:\/\/doi.org\/10.7937\/K9TCIA.2017.MURS5CL\">PROSTATEx<\/a> (DICOM, 371.21 MB)<\/td><td><div><p>\n<a download=\"\" href=\"\/wp-content\/uploads\/ProstateX-Original-MR-Images-NBIA-manifest_20200917.tcia\" target=\"_blank\"><button><i> <\/i> Download<\/button><\/a>\u00a0\n<\/p><p>(Requires\u00a0<a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a>.)<\/p><\/div><\/td><td><div><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table>","result_browse_title":"","version_number":[],"collection_downloads":[5859],"result_summary":"We created 66 high resolution segmentations for randomly chosen T2-weighted volumes of the\u00a0<a href=\"\/pages\/viewpage.action?pageId=23691656\">SPIE-AAPM-NCI PROSTATEx Challenges (PROSTATEx)<\/a>. The high\u00a0resolution segmentations were obtained\u00a0by\u00a0considering the three scan directions: for each scan direction (axial, sagittal, coronal),\u00a0the gland was manually delineated by a medical student, followed\u00a0by a review and corrections of an expert urologist.\u00a0These three anisotropic segmentations were fused to one isotropic segmentation by means of shape-based interpolation\u00a0in the following manner: (1) The signed distance transformation of the three segmentations is computed.\u00a0(2) The anisotropic distance volumes are transformed into an isotropic high-resolution representation with linear interpolation. (3) By averaging the distances, smoothing and thresholding them at zero, we obtained the fused segmentation. The resulting segmentations were manually verified and corrected further by the expert urologist if necessary.\u00a0Serving as ground truth for training CNNs, these segmentations have the potential to improve the segmentation accuracy of automated algorithms. By considering not only the axial scans but also sagittal and coronal scan directions, we aimed to have higher fidelity of the segmentations especially at the apex and base regions of the prostate.\nThe segmentations to standard DICOM representation were created with <em> <a href=\"https:\/\/github.com\/QIICR\/dcmqi\">dcmqi<\/a> <\/em>.\n<strong>Acknowledgements<\/strong>\n<ul><li>This work has been funded by the EU and the federal state of Saxony-Anhalt, Germany under grant number ZS\/2016\/08\/80388.<\/li><\/ul>\n<br\/>","result_featured_image":{"ID":"8732","post_author":"6","post_date":"2023-09-13 04:22:43","post_date_gmt":"2023-09-13 04:22:43","post_content":"","post_title":"High-Resolution","post_excerpt":"","post_status":"inherit","comment_status":"open","ping_status":"closed","post_password":"","post_name":"high-resolution","to_ping":"","pinged":"","post_modified":"2023-09-13 12:10:46","post_modified_gmt":"2023-09-13 12:10:46","post_content_filtered":"","post_parent":"5793","guid":"https:\/\/cm.vastapps.dev\/wp-content\/uploads\/High-Resolution.jpg","menu_order":"0","post_type":"attachment","post_mime_type":"image\/jpeg","comment_count":"0","pod_item_id":"8732"},"result_acknowledgements":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/analysis-results\/5793"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/analysis-results"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_analysis_result"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media\/8732"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5793"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}