{"id":5777,"date":"2023-09-04T03:37:12","date_gmt":"2023-09-04T03:37:12","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-analysis-result\/head-neck-ct-atlas\/"},"modified":"2023-09-13T12:09:54","modified_gmt":"2023-09-13T12:09:54","slug":"head-neck-ct-atlas","status":"publish","type":"tcia_analysis_result","link":"https:\/\/cm.vastapps.dev\/tcia-analysis-result\/head-neck-ct-atlas\/","title":{"rendered":"HEAD-NECK-CT-ATLAS"},"featured_media":0,"template":"","cancer_types":["Head And Neck Squamous Cell Carcinoma"],"citations":[4775,4776,2925],"full_export":"<h2 class=\"wiki-content\" id=\"DatafromHeadandNeckCancerCTAtlas(HeadNeckCTAtlas)-Description\">Description<\/h2><div class=\"wiki-content\"><p><span> <span style=\"color: rgb(51,51,51);\">This study describes a subset of the\u00a0<\/span> <a style=\"text-decoration: none;text-align: left;\" href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/Public\/HNSCC\" rel=\"nofollow\">HNSCC<\/a> <span style=\"color: rgb(51,51,51);\">\u00a0collection on TCIA.\u00a0<\/span> <\/span><\/p><h4 id=\"DatafromHeadandNeckCancerCTAtlas(HeadNeckCTAtlas)-PURPOSE:\"><span>PURPOSE:<\/span><\/h4><p>Cross sectional imaging is essential for the patient-specific planning and delivery of radiotherapy, a primary determinant of head and neck cancer outcomes. Publicly shared RT data is scarce due to high complexity of RT structure data and the need for registration in time, space, and across planning sets. We here introduce an open access imaging database for patients treated with radiotherapy for head and neck squamous cell carcinoma (HNSCC).<\/p><h4 id=\"DatafromHeadandNeckCancerCTAtlas(HeadNeckCTAtlas)-MATERIALSANDMETHODS:\">MATERIALS AND METHODS:<\/h4><p>2840 consecutive patients with HNSCC treated with curative-intent RT at MD Anderson Cancer Center from 2003 to 2013 were screened. Patients with whole-body PET-CT or abdominal CT scans both before and after RT were included (n=215). Clinical data were retrieved from the MD Anderson Cancer Center custom electronic medical record system, ClinicStation. Using cross sectional imaging, we calculated total body skeletal muscle and adipose content before and after treatment. All files were de-identified and transferred to The Cancer Imaging Archive servers using the RSNA Clinical Trial Processor program. Files were screened for errors or residual PHI using TagSniffer and Posda Tools software, reviewed by TCIA curators, then confirmed at the parent institution.<\/p><h4 id=\"DatafromHeadandNeckCancerCTAtlas(HeadNeckCTAtlas)-RESULTS:\">RESULTS:<\/h4><p>The HNSCC collection is a dataset consisting of 433,384 DICOM files from 3,225 series and 765 studies collected from 215 patients, which includes de-identified diagnostic imaging, radiation treatment planning, and follow up imaging. All imaging data are subject- and date-matched to clinical data from each patient, including demographics, risk factors, grade, stage, recurrence, and survival.<\/p><h4 id=\"DatafromHeadandNeckCancerCTAtlas(HeadNeckCTAtlas)-CONCLUSION:\">CONCLUSION:<\/h4><p>Recent advances in data archiving, patient de-identification, and image registration have allowed for the creation of a high quality RT-enriched imaging database within TCIA. Open access to these data allows for interinstitutional comparisons of complete RT details in non-randomized patient populations, allowing for a more granular understanding of three dimensional factors that influence treatment effectiveness and toxicity sparing.<\/p><p>A related dataset describing the other component of the\u00a0<span> <span style=\"color: rgb(51,51,51);\">the\u00a0<\/span> <a style=\"text-decoration: none;text-align: left;\" href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/Public\/HNSCC\" rel=\"nofollow\">HNSCC<\/a> <span style=\"color: rgb(51,51,51);\">\u00a0collection<\/span> <\/span> is here: <strong>Radiomics outcome prediction in Oropharyngeal cancer<\/strong> DOI: <a href=\"https:\/\/doi.org\/10.7937\/tcia.2020.2vx6-fy46\" class=\"external-link\" rel=\"nofollow\">10.7937\/TCIA.2020.2vx6-fy46<\/a><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#242813540dfd743a8c3341f482a1cc44952110ec\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#24281354d566e6efbf4440129d8790def60c0681\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#24281354da70bb0d8df4438b853b569c99a349ab\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#24281354db55b94c88da4f3181c3302ea07570f5\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"242813540dfd743a8c3341f482a1cc44952110ec\" active=\"true\" name=\"Data Access\" ><h3 id=\"DatafromHeadandNeckCancerCTAtlas(HeadNeckCTAtlas)-DataAccess\"><span style=\"color: rgb(23,43,77);\">Data Access<\/span><\/h3><p><br\/><\/p><div class=\"table-wrap\"><table class=\"wrapped fixed-width confluenceTable\" style=\"width: 28.9384%;\"><colgroup><col style=\"width: 26.7772%;\"\/><col style=\"width: 34.9806%;\"\/><col style=\"width: 38.2452%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Images\u00a0a<span style=\"color: rgb(38,44,49);\">nd Radiation Therapy Structures<\/span> (DICOM)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24281354\/HNSCC-doiJNLP-Lwi93B55.tcia?version=1&amp;modificationDate=1545238096675&amp;api=v2\" data-linked-resource-id=\"46334293\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"HNSCC-doiJNLP-Lwi93B55.tcia\" data-linked-resource-content-type=\"application\/x-nbia-manifest-file\" data-linked-resource-container-id=\"24281354\" data-linked-resource-container-version=\"39\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Data%20from%20Head%20and%20Neck%20Cancer%20CT%20Atlas%20(Head-Neck-CT-Atlas)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><p><span style=\"color: rgb(23,43,77);\">Download requires <a style=\"text-decoration: underline;\" rel=\"nofollow\" href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a> <\/span><\/p><\/div><\/td><td style=\"text-align: left;\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\" class=\"external-link\" rel=\"nofollow\">TCIA Restricted<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Clinical (XLS)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24281354\/Patient%20and%20Treatment%20Characteristics.xls?version=1&amp;modificationDate=1531497278289&amp;api=v2\" data-linked-resource-id=\"39878937\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"Patient and Treatment Characteristics.xls\" data-nice-type=\"Excel Spreadsheet\" data-linked-resource-content-type=\"application\/vnd.ms-excel\" data-linked-resource-container-id=\"24281354\" data-linked-resource-container-version=\"39\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Data%20from%20Head%20and%20Neck%20Cancer%20CT%20Atlas%20(Head-Neck-CT-Atlas)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><td style=\"text-align: left;\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Data Dictionary (XLS)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24281354\/Field%20Descriptions%20for%20Patient%20and%20Treatment%20Characteristics.xlsx?version=1&amp;modificationDate=1531497124879&amp;api=v2\" data-linked-resource-id=\"39878936\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"Field Descriptions for Patient and Treatment Characteristics.xlsx\" data-nice-type=\"Excel Spreadsheet\" data-linked-resource-content-type=\"application\/vnd.openxmlformats-officedocument.spreadsheetml.sheet\" data-linked-resource-container-id=\"24281354\" data-linked-resource-container-version=\"39\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Data%20from%20Head%20and%20Neck%20Cancer%20CT%20Atlas%20(Head-Neck-CT-Atlas)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p><span style=\"color: rgb(23,43,77);\">Please contact <a rel=\"nofollow\" href=\"mailto:help@cancerimagingarchive.net\" class=\"external-link\">help@cancerimagingarchive.net<\/a>\u00a0 with any questions regarding usage.<\/span><\/p><p><br\/><\/p><p><span style=\"color: rgb(23,43,77);\"><strong style=\"text-align: left;\"><span style=\"color: rgb(29,28,29);text-decoration: none;\">Collections Used in this Third Party Analysis<\/span><\/strong><br style=\"text-decoration: none;text-align: left;\"\/><span style=\"color: rgb(29,28,29);text-decoration: none;\">Below is a list of the Collections used in these analyses:<\/span><\/span><\/p><ul><li><span style=\"color: rgb(23,43,77);\"><a href=\"https:\/\/doi.org\/10.7937\/k9\/tcia.2020.a8sh-7363\" style=\"text-decoration: none;text-align: left;\" class=\"external-link\" rel=\"nofollow\">HNSCC<\/a><\/span><\/li><\/ul><\/div><div class=\"tabs-pane \" id=\"24281354d566e6efbf4440129d8790def60c0681\" name=\"Detailed Description\" ><h3 id=\"DatafromHeadandNeckCancerCTAtlas(HeadNeckCTAtlas)-DetailedDescription\">Detailed Description<\/h3><div class=\"table-wrap\"><table class=\"wrapped confluenceTable\"><colgroup> <col\/> <col\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\"><br\/><\/th><th class=\"confluenceTh\">Radiological Image statistics<\/th><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\"><p>Modalities<\/p><\/td><td colspan=\"1\" class=\"confluenceTd\"><p>CT, MR, PT, RT,<br\/>RTPLAN, RTDOSE<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Patients<\/p><\/td><td class=\"confluenceTd\"><p>215<\/p><\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Studies<\/p><\/td><td class=\"confluenceTd\">766<\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Series<\/p><\/td><td class=\"confluenceTd\">3225<\/td><\/tr><tr><td class=\"confluenceTd\"><p>Number of Images<\/p><\/td><td class=\"confluenceTd\">433,384<\/td><\/tr><tr><td class=\"confluenceTd\">Images Size (GB)<\/td><td class=\"confluenceTd\">93<\/td><\/tr><\/tbody><\/table><\/div><p class=\"auto-cursor-target\">Note from the investigators: Some PET scans will include two PET AC files\u2014one includes the head &amp; neck portion of the exam, the other includes eyes-to-thighs. There is no file naming convention to distinguish between the two, so delineation may require the use of a DICOM viewer.<\/p><\/div><div class=\"tabs-pane \" id=\"24281354da70bb0d8df4438b853b569c99a349ab\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"DatafromHeadandNeckCancerCTAtlas(HeadNeckCTAtlas)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy\u00a0<\/h3><p class=\"auto-cursor-target\">\nSome data in this collection contains images that could potentially be used to reconstruct a human face.  To safeguard the privacy of participants, users must sign and submit a <a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\" class=\"external-link\" rel=\"nofollow\">TCIA Restricted License Agreement<\/a> to <a href=\"mailto:help@cancerimagingarchive.net\" class=\"external-link\" rel=\"nofollow\">help@cancerimagingarchive.net<\/a> before accessing the data.<\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span>Grossberg\u00a0 A, <\/span> <span>Mohamed A, <\/span> <span>Elhalawani H, <\/span> <span>Bennett W, <\/span> <span>Smith K, <\/span> <span>Nolan T, <\/span> <span>Chamchod S, <\/span> <span>Kantor M, <\/span> <span>Browne T, <\/span> <span>Hutcheson K, <\/span> <span>Gunn G, <\/span> <span>Garden A, <\/span> <span>Frank S, R<\/span> <span>osenthal D, <\/span> <span>Freymann J, <\/span> <span>Fuller C.(2017).\u00a0 <strong>Data from Head and Neck Cancer CT Atlas<\/strong>. <span>The Cancer Imaging Archive<\/span>.\u00a0 DOI: <a href=\"http:\/\/doi.org\/10.7937\/K9\/TCIA.2017.umz8dv6s\" class=\"external-link\" rel=\"nofollow\">10.7937\/K9\/TCIA.2017.umz8dv6s<\/a> <\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span>Grossberg\u00a0 A, <\/span> <span>Mohamed A, <\/span> <span>Elhalawani H, <\/span> <span>Bennett W, <\/span> <span>Smith K, <\/span> <span>Nolan T, <\/span>\u00a0Williams B, Chamchod S, Heukelom J, <span>Kantor M, <\/span> <span>Browne T, <\/span> <span>Hutcheson K, <\/span> <span>Gunn G, <\/span> <span>Garden A,<\/span> Morrison W, <span>Frank S, R<\/span> <span>osenthal D, <\/span> <span>Freymann J, <\/span> <span>Fuller C.<\/span> (2018) <strong>Imaging and Clinical Data Archive for Head and Neck Squamous Cell Carcinoma Patients Treated with Radiotherapy<\/strong>. <em>Scientific Data<\/em> <span style=\"color: rgb(34,34,34);\">5<\/span> <span style=\"color: rgb(34,34,34);\">:180173 (2018) DOI: <a href=\"https:\/\/doi.org\/10.1038\/sdata.2018.173\" class=\"external-link\" rel=\"nofollow\">10.1038\/sdata.2018.173<\/a> <br\/><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. (2013) <strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>, Journal of Digital Imaging, 26:6 pp 1045-1057. DOI:\u00a0 <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">10.1007\/s10278-013-9622-7<\/a><\/p><\/div><\/div><h3 id=\"DatafromHeadandNeckCancerCTAtlas(HeadNeckCTAtlas)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains<\/span> <a class=\"external-link\" href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" rel=\"nofollow\"> a list of publications<\/a> <span> that leverage TCIA data. <\/span> If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" rel=\"nofollow\" class=\"external-link\"> contact the TCIA Helpdesk<\/a>. Below are some of the gathered publications using this data:<\/p><ol><li>\u00a0Chamchod S., et al. <strong>Quantitative body mass characterization before and after head and neck cancer radiotherapy: A challenge of height-weight formulae using computed tomography measurement.<\/strong> <span>Oral Oncol.<\/span> 2016 Oct;61:62-9. doi: <a href=\"http:\/\/dx.doi.org\/10.1016\/j.oraloncology.2016.08.012\" class=\"external-link\" rel=\"nofollow\">10.1016\/j.oraloncology.2016.08.012<\/a>.<\/li><li><span class=\"meta-authors--limited\"> <span class=\"wi-fullname brand-fg\">Grossberg AJ,<\/span> <span class=\"wi-fullname brand-fg\">Chamchod S,<\/span> <span class=\"wi-fullname brand-fg\">Fuller CD, et al. <\/span> <\/span> <strong>Association of Body Composition With Survival and Locoregional Control of Radiotherapy-Treated Head and Neck Squamous Cell Carcinoma<\/strong>. <span class=\"meta-citation-journal-name\">JAMA Oncol. <\/span> <span class=\"meta-citation\"> 2016;2(6):782-789. doi:<a href=\"http:\/\/dx.doi.org\/10.1001\/jamaoncol.2015.6339\" class=\"external-link\" rel=\"nofollow\">10.1001\/jamaoncol.2015.6339<\/a> <\/span><\/li><\/ol><\/div><div class=\"tabs-pane \" id=\"24281354db55b94c88da4f3181c3302ea07570f5\" name=\"Versions\" ><h3 id=\"DatafromHeadandNeckCancerCTAtlas(HeadNeckCTAtlas)-Version1(Current):2019\/07\/11\">Version 1 (Current): 2019\/07\/11<\/h3><div class=\"table-wrap\"><table class=\"wrapped fixed-width confluenceTable\" style=\"width: 28.4464%;\"><colgroup><col style=\"width: 28.3546%;\"\/><col style=\"width: 24.4164%;\"\/><col style=\"width: 47.3964%;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Images (DICOM)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24281354\/HNSCC-doiJNLP-Lwi93B55.tcia?version=1&amp;modificationDate=1545238096675&amp;api=v2\" data-linked-resource-id=\"46334293\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"HNSCC-doiJNLP-Lwi93B55.tcia\" data-linked-resource-content-type=\"application\/x-nbia-manifest-file\" data-linked-resource-container-id=\"24281354\" data-linked-resource-container-version=\"39\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Data%20from%20Head%20and%20Neck%20Cancer%20CT%20Atlas%20(Head-Neck-CT-Atlas)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><td style=\"text-align: left;\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/4556915\/TCIA%20Restricted%20License%2020220519.pdf?version=1&amp;modificationDate=1652964581655&amp;api=v2\" class=\"external-link\" rel=\"nofollow\">TCIA Restricted<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Clinical (XLS)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24281354\/Patient%20and%20Treatment%20Characteristics.xls?version=1&amp;modificationDate=1531497278289&amp;api=v2\" data-linked-resource-id=\"39878937\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"Patient and Treatment Characteristics.xls\" data-nice-type=\"Excel Spreadsheet\" data-linked-resource-content-type=\"application\/vnd.ms-excel\" data-linked-resource-container-id=\"24281354\" data-linked-resource-container-version=\"39\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Data%20from%20Head%20and%20Neck%20Cancer%20CT%20Atlas%20(Head-Neck-CT-Atlas)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><td style=\"text-align: left;\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Data Dictionary (XLS)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24281354\/Field%20Descriptions%20for%20Patient%20and%20Treatment%20Characteristics.xlsx?version=1&amp;modificationDate=1531497124879&amp;api=v2\" data-linked-resource-id=\"39878936\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"Field Descriptions for Patient and Treatment Characteristics.xlsx\" data-nice-type=\"Excel Spreadsheet\" data-linked-resource-content-type=\"application\/vnd.openxmlformats-officedocument.spreadsheetml.sheet\" data-linked-resource-container-id=\"24281354\" data-linked-resource-container-version=\"39\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Data%20from%20Head%20and%20Neck%20Cancer%20CT%20Atlas%20(Head-Neck-CT-Atlas)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><\/div>","make_new_version_button":"","related_collections":["CPTAC-HNSCC"],"result_doi":"10.7937\/K9\/TCIA.2017.umz8dv6s","versions":false,"cancer_locations":["Head-Neck"],"publications_related":"","result_download_info":"<br\/>\n\nPlease contact <a href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a>\u00a0 with any questions regarding usage.\n<br\/>\n<strong>Collections Used in this Third Party Analysis<\/strong><br\/>Below is a list of the Collections used in these analyses:\n<ul><li><a href=\"https:\/\/doi.org\/10.7937\/k9\/tcia.2020.a8sh-7363\">HNSCC<\/a><\/li><\/ul>","result_downloads":[5398,5399,5400],"result_page_accessibility":"Public","version_change_log_archived":"","additional_resources":"","date_updated":"2019-07-11","publications_using":"TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\"> a list of publications<\/a>  that leverage TCIA data.  If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact the TCIA Helpdesk<\/a>. Below are some of the gathered publications using this data:\n<ol><li>\u00a0Chamchod S., et al. <strong>Quantitative body mass characterization before and after head and neck cancer radiotherapy: A challenge of height-weight formulae using computed tomography measurement.<\/strong> Oral Oncol. 2016 Oct;61:62-9. doi: <a href=\"http:\/\/dx.doi.org\/10.1016\/j.oraloncology.2016.08.012\">10.1016\/j.oraloncology.2016.08.012<\/a>.<\/li><li> Grossberg AJ, Chamchod S, Fuller CD, et al.   <strong>Association of Body Composition With Survival and Locoregional Control of Radiotherapy-Treated Head and Neck Squamous Cell Carcinoma<\/strong>. JAMA Oncol.   2016;2(6):782-789. doi:<a href=\"http:\/\/dx.doi.org\/10.1001\/jamaoncol.2015.6339\">10.1001\/jamaoncol.2015.6339<\/a> <\/li><\/ol>","result_title":"Data from Head and Neck Cancer CT Atlas","subjects":"215","detailed_description":"Note from the investigators: Some PET scans will include two PET AC files\u2014one includes the head &amp; neck portion of the exam, the other includes eyes-to-thighs. There is no file naming convention to distinguish between the two, so delineation may require the use of a DICOM viewer.","result_short_title":"Head-Neck-CT-Atlas","supporting_data":["Radiation Therapy Structures"],"version_change_log":"","collections":"","result_browse_title":"","version_number":[],"collection_downloads":false,"result_summary":"This study describes a subset of the\u00a0 <a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/Public\/HNSCC\">HNSCC<\/a> \u00a0collection on TCIA.\u00a0\n<h4>PURPOSE:<\/h4>\nCross sectional imaging is essential for the patient-specific planning and delivery of radiotherapy, a primary determinant of head and neck cancer outcomes. Publicly shared RT data is scarce due to high complexity of RT structure data and the need for registration in time, space, and across planning sets. We here introduce an open access imaging database for patients treated with radiotherapy for head and neck squamous cell carcinoma (HNSCC).\n<h4>MATERIALS AND METHODS:<\/h4>\n2840 consecutive patients with HNSCC treated with curative-intent RT at MD Anderson Cancer Center from 2003 to 2013 were screened. Patients with whole-body PET-CT or abdominal CT scans both before and after RT were included (n=215). Clinical data were retrieved from the MD Anderson Cancer Center custom electronic medical record system, ClinicStation. Using cross sectional imaging, we calculated total body skeletal muscle and adipose content before and after treatment. All files were de-identified and transferred to The Cancer Imaging Archive servers using the RSNA Clinical Trial Processor program. Files were screened for errors or residual PHI using TagSniffer and Posda Tools software, reviewed by TCIA curators, then confirmed at the parent institution.\n<h4>RESULTS:<\/h4>\nThe HNSCC collection is a dataset consisting of 433,384 DICOM files from 3,225 series and 765 studies collected from 215 patients, which includes de-identified diagnostic imaging, radiation treatment planning, and follow up imaging. All imaging data are subject- and date-matched to clinical data from each patient, including demographics, risk factors, grade, stage, recurrence, and survival.\n<h4>CONCLUSION:<\/h4>\nRecent advances in data archiving, patient de-identification, and image registration have allowed for the creation of a high quality RT-enriched imaging database within TCIA. Open access to these data allows for interinstitutional comparisons of complete RT details in non-randomized patient populations, allowing for a more granular understanding of three dimensional factors that influence treatment effectiveness and toxicity sparing.\nA related dataset describing the other component of the\u00a0 the\u00a0 <a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/Public\/HNSCC\">HNSCC<\/a> \u00a0collection  is here: <strong>Radiomics outcome prediction in Oropharyngeal cancer<\/strong> DOI: <a href=\"https:\/\/doi.org\/10.7937\/tcia.2020.2vx6-fy46\">10.7937\/TCIA.2020.2vx6-fy46<\/a>","result_featured_image":false,"result_acknowledgements":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/analysis-results\/5777"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/analysis-results"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_analysis_result"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5777"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}