{"id":5761,"date":"2023-09-04T03:36:22","date_gmt":"2023-09-04T03:36:22","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-analysis-result\/nsclc-radiogenomics-stanford\/"},"modified":"2023-09-13T12:09:17","modified_gmt":"2023-09-13T12:09:17","slug":"nsclc-radiogenomics-stanford","status":"publish","type":"tcia_analysis_result","link":"https:\/\/cm.vastapps.dev\/tcia-analysis-result\/nsclc-radiogenomics-stanford\/","title":{"rendered":"NSCLC-RADIOGENOMICS-STANFORD"},"featured_media":8033,"template":"","cancer_types":false,"citations":[4768,4769,2925],"full_export":"<h2 id=\"NSCLCRadiogenomics:InitialStanfordStudyof26Cases(NSCLCRadiogenomicsStanford)-Description\">Description<\/h2><p><span class=\"confluence-embedded-file-wrapper image-right-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail confluence-content-image-border image-right\" draggable=\"false\" width=\"300\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/NSCLC%20Radiogenomics:%20Initial%20Stanford%20Study%20of%2026%20Cases%20(NSCLC%20Radiogenomics-Stanford)\/nsclc_for_wiki.PNG?api=v2\"><\/span><\/p><p><span>This subset of <a href=\"https:\/\/wiki.cancerimagingarchive.net\/pages\/viewpage.action?pageId=28672347\">NSCLC Radiogenomics<\/a> contains images from patients with non-small cell lung cancer (NSCLC) imaged prior to surgical excision with both thin-section computed tomography (CT) and whole body positron emissions tomography (PET)\/CT scans acquired under Institutional Review Board approval from Stanford University and the Veterans Administration Palo Alto Health Care System. The first installment of 26 cases (see shared list &quot;NSCLC Radiogenomics: Initial Stanford Study of 26 Cases&quot;) corresponds to microarray data acquired from the excised samples, which is available on the National Center for Biotechnology Information (NCBI) <\/span><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/geo\/query\/acc.cgi?acc=GSE28827\" class=\"external-link\" rel=\"nofollow\">Gene Expression Omnibus<\/a><span>, where Digital Imaging and Communications in Medicine (DICOM) patient names are identical to microarray sample names.\u00a0<\/span><\/p><p><span>For scientific and other inquiries about this dataset, please <a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\">contact TCIA's Helpdesk<\/a>.<\/span><\/p><p><br\/><\/p><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#6883610036220c66a5a436f90e4a0b54367bfae\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#6883610e703f075658f4b0a9f03aeca877d7f4b\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#6883610d170e52bc57d4c67b747b57bf88c460f\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#6883610aa756e3841914e7da45eadb37096a710\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"6883610036220c66a5a436f90e4a0b54367bfae\" active=\"true\" name=\"Data Access\" ><h3 id=\"NSCLCRadiogenomics:InitialStanfordStudyof26Cases(NSCLCRadiogenomicsStanford)-DataAccess\"><span style=\"color: rgb(23,43,77);\">Data Access<\/span><\/h3><p><br\/><\/p><div class=\"table-wrap\"><table class=\"fixed-table wrapped confluenceTable\"><colgroup><col style=\"width: 164.0px;\"\/><col style=\"width: 216.0px;\"\/><col style=\"width: 216.0px;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><th class=\"confluenceTh\">License<\/th><\/tr><tr><td class=\"confluenceTd\">Images (DICOM)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/6883610\/NSCLC_Radio_IntialRenamed26-doiJNLP-SV5x17C3.tcia?version=2&amp;modificationDate=1585594234437&amp;api=v2\" data-linked-resource-id=\"46334283\" data-linked-resource-version=\"2\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"NSCLC_Radio_IntialRenamed26-doiJNLP-SV5x17C3.tcia\" data-linked-resource-content-type=\"application\/x-nbia-manifest-file\" data-linked-resource-container-id=\"6883610\" data-linked-resource-container-version=\"52\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/NSCLC%20Radiogenomics:%20Initial%20Stanford%20Study%20of%2026%20Cases%20(NSCLC%20Radiogenomics-Stanford)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><p><span style=\"color: rgb(23,43,77);\">(Requires <a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\" rel=\"nofollow\" style=\"text-decoration: underline;\">NBIA Data Retriever<\/a>)<\/span><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Microarray Samples<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/geo\/query\/acc.cgi?acc=GSE28827\" class=\"external-link\" rel=\"nofollow\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/NSCLC%20Radiogenomics:%20Initial%20Stanford%20Study%20of%2026%20Cases%20(NSCLC%20Radiogenomics-Stanford)\/tcia_wiki_search_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p>\n<a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">CC BY 3.0<\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p><span style=\"color: rgb(23,43,77);\">Please contact <a rel=\"nofollow\" class=\"external-link\" href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a> with any questions regarding usage.<\/span><\/p><\/div><div class=\"tabs-pane \" id=\"6883610e703f075658f4b0a9f03aeca877d7f4b\" name=\"Detailed Description\" ><h3 id=\"NSCLCRadiogenomics:InitialStanfordStudyof26Cases(NSCLCRadiogenomicsStanford)-DetailedDescription\">Detailed Description<\/h3><p>The original 26 cases referenced in this manuscript have been renamed. A list of the mapping between GSM-XXX Patient IDs and R01-XXX Patient IDs can be found <u><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/6883610\/NSCLCRadiogenomic_PatientID_mapping.csv?version=1&amp;modificationDate=1513619942492&amp;api=v2\" data-linked-resource-id=\"30671908\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"NSCLCRadiogenomic_PatientID_mapping.csv\" data-linked-resource-content-type=\"text\/csv\" data-linked-resource-container-id=\"6883610\" data-linked-resource-container-version=\"52\">here<\/a><\/u>.<\/p><\/div><div class=\"tabs-pane \" id=\"6883610d170e52bc57d4c67b747b57bf88c460f\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"NSCLCRadiogenomics:InitialStanfordStudyof26Cases(NSCLCRadiogenomicsStanford)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy\u00a0<\/h3><p>\n<p>\nUsers must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" rel=\"nofollow\">TCIA Data Usage Policy and Restrictions<\/a>. Attribution should include references to the following citations:\n<\/p><\/p><p><br\/><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span>Napel, Sandy, &amp; Plevritis, Sylvia K. (2014). <strong>NSCLC Radiogenomics: Initial Stanford Study of 26 Cases (NSCLC Radiogenomics-Stanford) [Data Set].<\/strong> The Cancer Imaging Archive. <\/span><a href=\"http:\/\/doi.org\/10.7937\/K9\/TCIA.2014.X7ONY6B1\" class=\"external-link\" rel=\"nofollow\">http:\/\/doi.org\/10.7937\/K9\/TCIA.2014.X7ONY6B1<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(102,102,102);\"><span style=\"color: rgb(0,0,0);\">Gevaert, O., Xu, J., Hoang, C. D., Leung, A. N., Xu, Y., Quon, A., \u2026 Plevritis, S. K. (2012, August). <strong>Non-Small Cell Lung Cancer: Identifying Prognostic Imaging Biomarkers by Leveraging Public Gene Expression Microarray Data -Methods and Preliminary Results<\/strong>. Radiology. Radiological Society of North America (RSNA).<\/span> <a href=\"http:\/\/doi.org\/10.1148\/radiol.12111607\" class=\"external-link\" rel=\"nofollow\">http:\/\/doi.org\/10.1148\/radiol.12111607<\/a><\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., &amp; Prior, F. (2013). <strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>. In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045\u20131057). Springer Science and Business Media LLC. <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/a> PMCID: PMC3824915<\/p><\/div><\/div><h3 id=\"NSCLCRadiogenomics:InitialStanfordStudyof26Cases(NSCLCRadiogenomicsStanford)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains <\/span><a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" class=\"external-link\" rel=\"nofollow\">a list of publications<\/a><span> that leverage TCIA data. <\/span> If you have a manuscript you'd like to add please <a rel=\"nofollow\" href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\">contact TCIA's Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"6883610aa756e3841914e7da45eadb37096a710\" name=\"Versions\" ><h3 id=\"NSCLCRadiogenomics:InitialStanfordStudyof26Cases(NSCLCRadiogenomicsStanford)-Version1(Current):2013\/03\/01\">Version 1 (Current): 2013\/03\/01<\/h3><div class=\"table-wrap\"><table class=\"wrapped fixed-table confluenceTable\"><colgroup><col style=\"width: 160.0px;\"\/><col style=\"width: 226.0px;\"\/><\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td class=\"confluenceTd\">Images (DICOM)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/6883610\/NSCLC_Radio_IntialRenamed26-doiJNLP-SV5x17C3.tcia?version=2&amp;modificationDate=1585594234437&amp;api=v2\" data-linked-resource-id=\"46334283\" data-linked-resource-version=\"2\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"NSCLC_Radio_IntialRenamed26-doiJNLP-SV5x17C3.tcia\" data-linked-resource-content-type=\"application\/x-nbia-manifest-file\" data-linked-resource-container-id=\"6883610\" data-linked-resource-container-version=\"52\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/NSCLC%20Radiogenomics:%20Initial%20Stanford%20Study%20of%2026%20Cases%20(NSCLC%20Radiogenomics-Stanford)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Microarray Samples<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/geo\/query\/acc.cgi?acc=GSE28827\" class=\"external-link\" rel=\"nofollow\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/NSCLC%20Radiogenomics:%20Initial%20Stanford%20Study%20of%2026%20Cases%20(NSCLC%20Radiogenomics-Stanford)\/tcia_wiki_search_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div>","make_new_version_button":"","related_collections":false,"result_doi":"http:\/\/doi.org\/10.7937\/K9\/TCIA.2014.X7ONY6B1","versions":false,"cancer_locations":false,"publications_related":"","result_download_info":"<br\/>\n\nPlease contact <a href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a> with any questions regarding usage.","result_downloads":[5389,5390],"result_page_accessibility":"Public","version_change_log_archived":"","additional_resources":"","date_updated":"2023-09-13","publications_using":"TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\">a list of publications<\/a> that leverage TCIA data.  If you have a manuscript you'd like to add please <a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact TCIA's Helpdesk<\/a>.","result_title":"NSCLC Radiogenomics: Initial Stanford Study of 26 Cases","subjects":[],"detailed_description":"The original 26 cases referenced in this manuscript have been renamed. A list of the mapping between GSM-XXX Patient IDs and R01-XXX Patient IDs can be found <u><a data-linked-resource-container-id=\"6883610\" data-linked-resource-container-version=\"52\" data-linked-resource-content-type=\"text\/csv\" data-linked-resource-default-alias=\"NSCLCRadiogenomic_PatientID_mapping.csv\" data-linked-resource-id=\"30671908\" data-linked-resource-type=\"attachment\" data-linked-resource-version=\"1\" download=\"\" href=\"\/wp-content\/uploads\/NSCLCRadiogenomic_PatientID_mapping.csv\" target=\"_blank\">here<\/a><\/u>.","result_short_title":"NSCLC Radiogenomics-Stanford","supporting_data":false,"version_change_log":"","collections":"","result_browse_title":"","version_number":[],"collection_downloads":false,"result_summary":"This subset of <a href=\"\/display\/Public\/NSCLC+Radiogenomics\">NSCLC Radiogenomics<\/a> contains images from patients with non-small cell lung cancer (NSCLC) imaged prior to surgical excision with both thin-section computed tomography (CT) and whole body positron emissions tomography (PET)\/CT scans acquired under Institutional Review Board approval from Stanford University and the Veterans Administration Palo Alto Health Care System. The first installment of 26 cases (see shared list \"NSCLC Radiogenomics: Initial Stanford Study of 26 Cases\") corresponds to microarray data acquired from the excised samples, which is available on the National Center for Biotechnology Information (NCBI) <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/geo\/query\/acc.cgi?acc=GSE28827\">Gene Expression Omnibus<\/a>, where Digital Imaging and Communications in Medicine (DICOM) patient names are identical to microarray sample names.\u00a0\nFor scientific and other inquiries about this dataset, please <a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\">contact TCIA's Helpdesk<\/a>.\n<br\/>\n<br\/>","result_featured_image":{"ID":"8033","post_author":"6","post_date":"2023-09-13 03:52:55","post_date_gmt":"2023-09-13 03:52:55","post_content":"","post_title":"nsclc_for_wiki","post_excerpt":"","post_status":"inherit","comment_status":"open","ping_status":"closed","post_password":"","post_name":"nsclc_for_wiki","to_ping":"","pinged":"","post_modified":"2023-09-13 12:01:02","post_modified_gmt":"2023-09-13 12:01:02","post_content_filtered":"","post_parent":"5639","guid":"https:\/\/cm.vastapps.dev\/wp-content\/uploads\/nsclc_for_wiki.tif","menu_order":"0","post_type":"attachment","post_mime_type":"image\/tiff","comment_count":"0","pod_item_id":"8033"},"result_acknowledgements":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/analysis-results\/5761"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/analysis-results"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_analysis_result"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media\/8033"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5761"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}