{"id":5760,"date":"2023-09-04T03:36:19","date_gmt":"2023-09-04T03:36:19","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-analysis-result\/luad-ct-survival\/"},"modified":"2023-09-13T12:09:15","modified_gmt":"2023-09-13T12:09:15","slug":"luad-ct-survival","status":"publish","type":"tcia_analysis_result","link":"https:\/\/cm.vastapps.dev\/tcia-analysis-result\/luad-ct-survival\/","title":{"rendered":"LUAD-CT-SURVIVAL"},"featured_media":0,"template":"","cancer_types":["Lung Adenocarcinoma"],"citations":[4765,4766,4767,2925],"full_export":"<h2 id=\"LongandShortSurvivalinAdenocarcinomaLungCTs(LUADCTSurvival)-Summary\">Summary<\/h2><p>The dataset consists of pre-surgical chest CT images of 40 subjects from the H. Lee Moffitt Cancer Center &amp; Research Institute, Tampa, Florida. The CT images were acquired by standard-of-care, contrast-enhanced CT scans among patients who had non-small cell cancer with biopsy-verified adenocarcinoma with 2 years of follow-up. A region-growing algorithm segmented the tumor with seed points that were chosen by radiologists.<\/p><p>The adenocarcinoma cases are divided into the upper and lower quartiles of survival. Both the lower and upper quartiles have 20 cases. The lower quartile survival timeline is 103 to 498 days while the upper quartile timeline is 1351 to 2163 days. The average survival of the lower and upper quartiles is 288 days and 1569 days respectively. The median survival for the lower and upper quartiles is 289 and 1551 days respectively. The overall mean survival time is 879 days and median survival time is 925 days. Three of these cases, QIN-LSC-0009, QIN-LSC-0014, and QIN-LSC-0064\u00a0<span style=\"color: rgb(0,0,0);\">appear in\u00a0<\/span> <a href=\"http:\/\/doi.org\/10.7937\/K9\/TCIA.2015.A6V7JIWX\" class=\"external-link\" rel=\"nofollow\">LungCT-Diagnosis<\/a> <span style=\"color: rgb(0,0,0);\">\u00a0collection, while the remaining 37 cases are from the\u00a0<\/span> <a href=\"http:\/\/doi.org\/10.7937\/K9\/TCIA.2015.NPGZYZBZ\" class=\"external-link\" rel=\"nofollow\">QIN Lung CT<\/a> <span style=\"color: rgb(0,0,0);\">\u00a0collection.<\/span><\/p><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#2428440668a9ce71acb44943900cb1535a655d5b\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#242844069e810546bcd54019aa0f4b00834b2e2e\"><strong>Detailed Description<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#242844065a026a94de444a6591a993e2c4ddd95b\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#24284406225455f2cfd147b9953160a9c16bb132\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"2428440668a9ce71acb44943900cb1535a655d5b\" active=\"true\" name=\"Data Access\" ><h3 id=\"LongandShortSurvivalinAdenocarcinomaLungCTs(LUADCTSurvival)-DataAccess\"><span style=\"color: rgb(23,43,77);\">Data Access<\/span><\/h3><p><span style=\"color: rgb(23,43,77);\">Click the\u00a0<strong>Download<\/strong> <span>\u00a0<\/span>button\u00a0to save the data.<br\/><\/span><\/p><div class=\"table-wrap\"><table class=\"fixed-table wrapped confluenceTable\"><colgroup> <col style=\"width: 278.0px;\"\/> <col style=\"width: 303.0px;\"\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td class=\"confluenceTd\">Images (DICOM)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24284406\/LongShortSurvivalAdenocarcinoma-doiJNLP-qOFdxYUi.tcia?api=v2\" rel=\"nofollow\"> <span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Long%20and%20Short%20Survival%20in%20Adenocarcinoma%20Lung%20CTs%20(LUAD-CT-Survival)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><p><span style=\"color: rgb(23,43,77);\">Click the\u00a0<strong>Download<\/strong> <span>\u00a0<\/span>button\u00a0to save a &quot;.tcia&quot; manifest file to your computer, which you must open with the<span>\u00a0<\/span> <a style=\"text-decoration: underline;\" rel=\"nofollow\" href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a><\/span><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Tumor Segmentations (NIfTI)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/64685083\/segmentations.zip?version=1&amp;modificationDate=1577991044335&amp;api=v2\" data-linked-resource-id=\"64685087\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"segmentations.zip\" data-nice-type=\"Zip Archive\" data-linked-resource-content-type=\"application\/zip\" data-linked-resource-container-id=\"64685083\" data-linked-resource-container-version=\"21\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Long%20and%20Short%20Survival%20in%20Adenocarcinoma%20Lung%20CTs%20(LUAD-CT-Survival)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Image Features and Patient Survival (CSV)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24284406\/FeaturesWithLabels%20%281%29.csv?version=1&amp;modificationDate=1502480497650&amp;api=v2\" data-linked-resource-id=\"25985202\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"FeaturesWithLabels (1).csv\" data-linked-resource-content-type=\"text\/csv\" data-linked-resource-container-id=\"24284406\" data-linked-resource-container-version=\"24\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Long%20and%20Short%20Survival%20in%20Adenocarcinoma%20Lung%20CTs%20(LUAD-CT-Survival)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p><span style=\"color: rgb(23,43,77);\">Please contact <a class=\"external-link\" rel=\"nofollow\" href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a>\u00a0 with any questions regarding usage.<\/span><\/p><p><strong><span style=\"color: rgb(29,28,29);text-decoration: none;\">Collections Used in this Third Party Analysis<\/span><\/strong><br style=\"text-decoration: none;text-align: left;\"\/><span style=\"color: rgb(29,28,29);text-decoration: none;\">Below is a list of the Collections used in these analyses:<\/span><\/p><ul><li><span style=\"color: rgb(23,43,77);\"><a href=\"https:\/\/doi.org\/10.7937\/K9\/TCIA.2015.A6V7JIWX\" class=\"external-link\" rel=\"nofollow\">LungCT-Diagnosis<\/a><\/span><\/li><li><span style=\"color: rgb(23,43,77);\"> <a href=\"https:\/\/doi.org\/10.7937\/K9\/TCIA.2015.NPGZYZBZ\" class=\"external-link\" rel=\"nofollow\">QIN LUNG CT<\/a><\/span><\/li><\/ul><p><br\/><\/p><\/div><div class=\"tabs-pane \" id=\"242844069e810546bcd54019aa0f4b00834b2e2e\" name=\"Detailed Description\" ><h3 id=\"LongandShortSurvivalinAdenocarcinomaLungCTs(LUADCTSurvival)-DetailedDescription\">Detailed Description<\/h3><p>Image data is available in DICOM format. Segmentation data is available in .nii format. Labels are available in .csv format. The first column is subject identification. The second column is survival class. \u00a0Subsequent columns are computed image features which are described in the following publications.<\/p><\/div><div class=\"tabs-pane \" id=\"242844065a026a94de444a6591a993e2c4ddd95b\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"LongandShortSurvivalinAdenocarcinomaLungCTs(LUADCTSurvival)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy\u00a0<\/h3><p class=\"auto-cursor-target\">\n<p>\nUsers of this data must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" re=\"nofollow\" rel=\"nofollow\">TCIA Data Usage Policy<\/a> and the <a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">Creative Commons Attribution 3.0 Unported License<\/a> under which it has been published. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Goldgof D., Hall L., Hawkins S.H., Schabath M.B., Stringfield O., Garcia A., Balagurunathan Y., Kim J., Eschrich S., Berglund A.E., Gatenby R., Gillies R.J. (2017) <strong>Long and Short Survival in Adenocarcinoma Lung CTs.<\/strong> The Cancer Imaging Archive. <a href=\"https:\/\/doi.org\/10.7937\/K9\/TCIA.2017.0tv7b9x1\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.7937\/K9\/TCIA.2017.0tv7b9x1<\/a><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F.\u00a0T<strong>he Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. <span class=\"u-clearfix c-bibliographic-information__value\"> <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/a> <\/span><\/p><\/div><\/div><p><span style=\"color: rgb(23,43,77);\"> <strong>In addition to the dataset citation above, please be sure to cite the following if you utilize these data in your research:<\/strong> <\/span><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span class=\"doi\">Paul, R., Hawkins, S., Balagurunathan, Y., Schabath, M., Gillies, R., Hall, L., &amp; Goldgof, D. (2016). <strong>Deep Feature Transfer Learning in Combination with Traditional Features Predicts Survival among Patients with Lung Adenocarcinoma<\/strong>. Tomography, 2(4), 388\u2013395. <a href=\"https:\/\/doi.org\/10.18383\/j.tom.2016.00211\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.18383\/j.tom.2016.00211<\/a> <\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Hawkins, S. H., Korecki, J. N., Balagurunathan, Y., Yuhua Gu, Kumar, V., Basu, S., Hall, L. O., Goldgof, D. B., Gatenby, R. A., &amp; Gillies, R. J. (2014). <strong>Predicting Outcomes of Nonsmall Cell Lung Cancer Using CT Image Features<\/strong>. IEEE Access, 2, 1418\u20131426. <a href=\"https:\/\/doi.org\/10.1109\/access.2014.2373335\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1109\/access.2014.2373335<\/a><\/p><\/div><\/div><h3 id=\"LongandShortSurvivalinAdenocarcinomaLungCTs(LUADCTSurvival)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains<\/span> <a class=\"external-link\" href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\" rel=\"nofollow\"> a list of publications<\/a> <span> that leverage TCIA data. <\/span> If you have a manuscript you'd like to add please<a class=\"external-link\" href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" rel=\"nofollow\"> contact the TCIA Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"24284406225455f2cfd147b9953160a9c16bb132\" name=\"Versions\" ><h3 id=\"LongandShortSurvivalinAdenocarcinomaLungCTs(LUADCTSurvival)-Version1(Current):2017\/08\/11\">Version 1 (Current): 2017\/08\/11<\/h3><div class=\"table-wrap\"><table class=\"fixed-table wrapped confluenceTable\"><colgroup> <col style=\"width: 278.0px;\"\/> <col style=\"width: 303.0px;\"\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td class=\"confluenceTd\">Images (DICOM)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24284406\/LongShortSurvivalAdenocarcinoma-doiJNLP-qOFdxYUi.tcia?api=v2\" rel=\"nofollow\"> <span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Long%20and%20Short%20Survival%20in%20Adenocarcinoma%20Lung%20CTs%20(LUAD-CT-Survival)\/tcia_wiki_download_button.png?api=v2\"><\/span> <\/a><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Tumor Segmentations (NIFTI)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/64685083\/segmentations.zip?version=1&amp;modificationDate=1577991044335&amp;api=v2\" data-linked-resource-id=\"64685087\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"segmentations.zip\" data-nice-type=\"Zip Archive\" data-linked-resource-content-type=\"application\/zip\" data-linked-resource-container-id=\"64685083\" data-linked-resource-container-version=\"21\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Long%20and%20Short%20Survival%20in%20Adenocarcinoma%20Lung%20CTs%20(LUAD-CT-Survival)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\">Image Features and Patient Survival (CSV)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/24284406\/FeaturesWithLabels%20%281%29.csv?version=1&amp;modificationDate=1502480497650&amp;api=v2\" data-linked-resource-id=\"25985202\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"FeaturesWithLabels (1).csv\" data-linked-resource-content-type=\"text\/csv\" data-linked-resource-container-id=\"24284406\" data-linked-resource-container-version=\"24\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Long%20and%20Short%20Survival%20in%20Adenocarcinoma%20Lung%20CTs%20(LUAD-CT-Survival)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div>","make_new_version_button":"","related_collections":["LUNGCT-DIAGNOSIS","QIN-LUNG-CT"],"result_doi":"10.7937\/K9\/TCIA.2017.0tv7b9x1","versions":false,"cancer_locations":["Chest"],"publications_related":"","result_download_info":"Click the\u00a0<strong>Download<\/strong> \u00a0button\u00a0to save the data.<br\/>\n\nPlease contact <a href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a>\u00a0 with any questions regarding usage.\n<strong>Collections Used in this Third Party Analysis<\/strong><br\/>Below is a list of the Collections used in these analyses:\n<ul><li><a href=\"https:\/\/doi.org\/10.7937\/K9\/TCIA.2015.A6V7JIWX\">LungCT-Diagnosis<\/a><\/li><li> <a href=\"https:\/\/doi.org\/10.7937\/K9\/TCIA.2015.NPGZYZBZ\">QIN LUNG CT<\/a><\/li><\/ul>\n<br\/>","result_downloads":[5386,5387,5388],"result_page_accessibility":"Public","version_change_log_archived":"","additional_resources":"","date_updated":"2017-08-11","publications_using":"TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\"> a list of publications<\/a>  that leverage TCIA data.  If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact the TCIA Helpdesk<\/a>.","result_title":"Long and Short Survival in Adenocarcinoma Lung CTs","subjects":"40","detailed_description":"Image data is available in DICOM format. Segmentation data is available in .nii format. Labels are available in .csv format. The first column is subject identification. The second column is survival class. \u00a0Subsequent columns are computed image features which are described in the following publications.","result_short_title":"LUAD-CT-Survival","supporting_data":["Tumor segmentations","radiomic image features"],"version_change_log":"","collections":"","result_browse_title":"","version_number":[],"collection_downloads":false,"result_summary":"The dataset consists of pre-surgical chest CT images of 40 subjects from the H. Lee Moffitt Cancer Center &amp; Research Institute, Tampa, Florida. The CT images were acquired by standard-of-care, contrast-enhanced CT scans among patients who had non-small cell cancer with biopsy-verified adenocarcinoma with 2 years of follow-up. A region-growing algorithm segmented the tumor with seed points that were chosen by radiologists.\nThe adenocarcinoma cases are divided into the upper and lower quartiles of survival. Both the lower and upper quartiles have 20 cases. The lower quartile survival timeline is 103 to 498 days while the upper quartile timeline is 1351 to 2163 days. The average survival of the lower and upper quartiles is 288 days and 1569 days respectively. The median survival for the lower and upper quartiles is 289 and 1551 days respectively. The overall mean survival time is 879 days and median survival time is 925 days. Three of these cases, QIN-LSC-0009, QIN-LSC-0014, and QIN-LSC-0064\u00a0appear in\u00a0 <a href=\"http:\/\/doi.org\/10.7937\/K9\/TCIA.2015.A6V7JIWX\">LungCT-Diagnosis<\/a> \u00a0collection, while the remaining 37 cases are from the\u00a0 <a href=\"http:\/\/doi.org\/10.7937\/K9\/TCIA.2015.NPGZYZBZ\">QIN Lung CT<\/a> \u00a0collection.\n<br\/>","result_featured_image":false,"result_acknowledgements":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/analysis-results\/5760"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/analysis-results"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_analysis_result"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5760"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}