{"id":5748,"date":"2023-09-04T03:35:26","date_gmt":"2023-09-04T03:35:26","guid":{"rendered":"https:\/\/cm.vastapps.dev\/tcia-analysis-result\/tcga-kirc-radiogenomics\/"},"modified":"2023-09-13T12:08:23","modified_gmt":"2023-09-13T12:08:23","slug":"tcga-kirc-radiogenomics","status":"publish","type":"tcia_analysis_result","link":"https:\/\/cm.vastapps.dev\/tcia-analysis-result\/tcga-kirc-radiogenomics\/","title":{"rendered":"TCGA-KIRC-RADIOGENOMICS"},"featured_media":0,"template":"","cancer_types":["Renal Clear Cell Carcinoma"],"citations":[4748,4749,2925],"full_export":"<h2 id=\"RadiogenomicsofClearCellRenalCellCarcinoma:PreliminaryFindingsofTheCancerGenomeAtlasRenalCellCarcinoma(TCGARCC)ResearchGroup(TCGAKIRCRadiogenomics)-Description\">Description<\/h2><h4 id=\"RadiogenomicsofClearCellRenalCellCarcinoma:PreliminaryFindingsofTheCancerGenomeAtlasRenalCellCarcinoma(TCGARCC)ResearchGroup(TCGAKIRCRadiogenomics)-PURPOSE:\"><span style=\"font-size: 14.0px;line-height: 1.42857;\">PURPOSE:<\/span><\/h4><div><p>To investigate associations between imaging features and mutational status of clear cell renal cell carcinoma (ccRCC).<\/p><h4 id=\"RadiogenomicsofClearCellRenalCellCarcinoma:PreliminaryFindingsofTheCancerGenomeAtlasRenalCellCarcinoma(TCGARCC)ResearchGroup(TCGAKIRCRadiogenomics)-MATERIALSANDMETHODS:\">MATERIALS AND METHODS:<\/h4><p>This multi-institutional, multi-reader study included 103 patients (77 men; median age 59\u00a0years, range 34-79) with ccRCC examined with CT in 81 patients, MRI in 19, and both CT and MRI in three; images were downloaded from The Cancer Imaging Archive, an NCI-funded project for genome-mapping and analyses. Imaging features [size (mm), margin (well-defined or ill-defined), composition (solid or cystic), necrosis (for solid tumors: 0%, 1%-33%, 34%-66% or &gt;66%), growth pattern (endophytic, &lt;50% exophytic, or \u226550% exophytic), and calcification (present, absent, or indeterminate)] were reviewed independently by three readers blinded to mutational data. The association of imaging features with mutational status (VHL, BAP1, PBRM1, SETD2, KDM5C, and MUC4) was assessed.<\/p><h4 id=\"RadiogenomicsofClearCellRenalCellCarcinoma:PreliminaryFindingsofTheCancerGenomeAtlasRenalCellCarcinoma(TCGARCC)ResearchGroup(TCGAKIRCRadiogenomics)-RESULTS:\">RESULTS:<\/h4><p>Median tumor size was 49\u00a0mm (range 14-162\u00a0mm), 73 (71%) tumors had well-defined margins, 98 (95%) tumors were solid, 95 (92%) showed presence of necrosis, 46 (45%) had \u226550% exophytic component, and 18 (19.8%) had calcification. VHL (n\u00a0=\u00a052) and PBRM1 (n\u00a0=\u00a024) were the most common mutations. BAP1 mutation was associated with ill-defined margin and presence of calcification (p\u00a0=\u00a00.02 and 0.002, respectively, Pearson's \u03c7\u00a0<sup>2<\/sup>\u00a0test); MUC4 mutation was associated with an exophytic growth pattern (p\u00a0=\u00a00.002, Mann-Whitney U test).<\/p><h4 id=\"RadiogenomicsofClearCellRenalCellCarcinoma:PreliminaryFindingsofTheCancerGenomeAtlasRenalCellCarcinoma(TCGARCC)ResearchGroup(TCGAKIRCRadiogenomics)-CONCLUSIONS:\">CONCLUSIONS:<\/h4><p>BAP1 mutation was associated with ill-defined tumor margins and presence of calcification; MUC4 mutation was associated with exophytic growth. Given the known prognostic implications of BAP1 and MUC4 mutations, these results support using radiogenomics to aid in prognostication and management.<\/p><p><br\/><\/p><div class=\"tab-style-builtin\"><div class=\"localtabs-macro\"><div class=\"aui-tabs horizontal-tabs\" role=\"application\" data-aui-responsive=\"true\"><ul class=\"tabs-menu\"><li class=\"menu-item bv-localtab  active-tab \"><a href=\"#190385920b6a2e47bae644d3b1c9253735b51f9a\"><strong>Data Access<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#190385925cf87bed7d6248bbbe74f22d55169e27\"><strong>Citations &amp; Data Usage Policy<\/strong><\/a> <\/li><li class=\"menu-item bv-localtab \"><a href=\"#19038592d04970eb3f32445b8cce22c997998e2f\"><strong>Versions<\/strong><\/a> <\/li><\/ul><div class=\"tabs-pane  active-pane \" id=\"190385920b6a2e47bae644d3b1c9253735b51f9a\" active=\"true\" name=\"Data Access\" ><h3 id=\"RadiogenomicsofClearCellRenalCellCarcinoma:PreliminaryFindingsofTheCancerGenomeAtlasRenalCellCarcinoma(TCGARCC)ResearchGroup(TCGAKIRCRadiogenomics)-DataAccess\"><span style=\"color: rgb(23,43,77);\">Data Access<\/span><\/h3><p><span style=\"color: rgb(23,43,77);\">Click the\u00a0<strong>Download<\/strong> <span>\u00a0<\/span>button\u00a0to save a &quot;.tcia&quot; manifest file to your computer, which you must open with the<span>\u00a0<\/span> <a style=\"text-decoration: underline;\" rel=\"nofollow\" href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a> <\/span><\/p><div class=\"table-wrap\"><table class=\"wrapped fixed-width confluenceTable\" style=\"width: 53.5299%;\"><colgroup> <col style=\"width: 59.4766%;\"\/> <col style=\"width: 40.4708%;\"\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td class=\"confluenceTd\"><span style=\"color: rgb(33,37,41);\"><span style=\"color: rgb(33,37,41);\">Corresponding Original MR Images from <a style=\"letter-spacing: 0.0px;\" href=\"https:\/\/doi.org\/10.7937\/K9\/TCIA.2016.V6PBVTDR\" class=\"external-link\" rel=\"nofollow\">TCGA-KIRC<\/a> <\/span><\/span>(DICOM)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/19038592\/doiJNLP-DG2Mvxzc.tcia?version=1&amp;modificationDate=1585592240179&amp;api=v2\" data-linked-resource-id=\"70222905\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"doiJNLP-DG2Mvxzc.tcia\" data-linked-resource-content-type=\"application\/x-nbia-manifest-file\" data-linked-resource-container-id=\"19038592\" data-linked-resource-container-version=\"20\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Radiogenomics%20of%20Clear%20Cell%20Renal%20Cell%20Carcinoma:%20Preliminary%20Findings%20of%20The%20Cancer%20Genome%20Atlas-Renal%20Cell%20Carcinoma%20(TCGA-RCC)%20Research%20Group%20(TCGA-KIRC-Radiogenomics)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><\/tr><tr><td colspan=\"1\" class=\"confluenceTd\"><span style=\"color: rgb(23,43,77);\">Radiologist annotations, mutation status, and clinical variables<\/span>\u00a0(CSV)<\/td><td colspan=\"1\" class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/19038592\/FullDataforAnalysis071714.csv?version=1&amp;modificationDate=1432827697743&amp;api=v2\" data-linked-resource-id=\"21692420\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"FullDataforAnalysis071714.csv\" data-linked-resource-content-type=\"text\/csv\" data-linked-resource-container-id=\"19038592\" data-linked-resource-container-version=\"20\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Radiogenomics%20of%20Clear%20Cell%20Renal%20Cell%20Carcinoma:%20Preliminary%20Findings%20of%20The%20Cancer%20Genome%20Atlas-Renal%20Cell%20Carcinoma%20(TCGA-RCC)%20Research%20Group%20(TCGA-KIRC-Radiogenomics)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><p><span style=\"color: rgb(23,43,77);\">Please contact <a rel=\"nofollow\" href=\"mailto:help@cancerimagingarchive.net\" class=\"external-link\">help@cancerimagingarchive.net<\/a>\u00a0 with any questions regarding usage.<\/span><\/p><p><strong><span style=\"color: rgb(29,28,29);text-decoration: none;\">Collections Used in this Third Party Analysis<\/span><\/strong><br style=\"text-decoration: none;text-align: left;\"\/><span style=\"color: rgb(29,28,29);text-decoration: none;\">Below is a list of the Collections used in these analyses:<\/span><\/p><ul><li><span style=\"color: rgb(29,28,29);text-decoration: none;\"><a href=\"https:\/\/doi.org\/10.7937\/K9\/TCIA.2016.V6PBVTDR\" class=\"external-link\" rel=\"nofollow\">TCGA-KIRC<\/a><\/span><\/li><\/ul><\/div><div class=\"tabs-pane \" id=\"190385925cf87bed7d6248bbbe74f22d55169e27\" name=\"Citations BITVOODOO_ANDamp; Data Usage Policy\" ><h3 id=\"RadiogenomicsofClearCellRenalCellCarcinoma:PreliminaryFindingsofTheCancerGenomeAtlasRenalCellCarcinoma(TCGARCC)ResearchGroup(TCGAKIRCRadiogenomics)-Citations&amp;DataUsagePolicy\">Citations &amp; Data Usage Policy\u00a0<\/h3><p class=\"auto-cursor-target\">\n<p>\nUsers of this data must abide by the <a href=\"https:\/\/wiki.cancerimagingarchive.net\/x\/c4hF\" class=\"external-link\" re=\"nofollow\" rel=\"nofollow\">TCIA Data Usage Policy<\/a> and the <a href=\"https:\/\/creativecommons.org\/licenses\/by\/3.0\/\" class=\"external-link\" rel=\"nofollow\">Creative Commons Attribution 3.0 Unported License<\/a> under which it has been published. Attribution should include references to the following citations:\n<\/p><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Data Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(102,102,102);\">Shinagare AB, Vikram R, Jaffe C, Akin O, Kirby J, Huang E, Freymann J, Sainani NI, Sadow CA, Bathala TK, Rubin DL, Oto A, Heller MT, Surabhi VR, Katabathina V, Silverman SG. (2014). <strong>Radiogenomics of Clear Cell Renal Cell Carcinoma: Preliminary Findings of The Cancer Genome Atlas-Renal Cell Carcinoma (TCGA-RCC) Research Group<\/strong>. The Cancer Imaging Archive. <a href=\"http:\/\/doi.org\/10.7937\/K9\/TCIA.2014.K6M61GDW\" class=\"external-link\" rel=\"nofollow\">http:\/\/doi.org\/10.7937\/K9\/TCIA.2014.K6M61GDW<\/a> <\/span><\/p><\/div><\/div><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">TCIA Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p>Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. (2013) <strong>The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository<\/strong>, Journal of Digital Imaging, Volume 26, Number 6, pp 1045-1057. DOI: <a href=\"https:\/\/doi.org\/10.1007\/s10278-013-9622-7\" rel=\"nofollow\" class=\"external-link\">https:\/\/doi.org\/10.1007\/s10278-013-9622-7<\/a><\/p><\/div><\/div><p><span style=\"color: rgb(23,43,77);\"> <strong>In addition to the dataset citation above, please be sure to cite the following if you utilize these data in your research:<\/strong> <\/span><\/p><div class=\"confluence-information-macro confluence-information-macro-information\"><p class=\"title\">Publication Citation<\/p><span class=\"aui-icon aui-icon-small aui-iconfont-info confluence-information-macro-icon\"><\/span><div class=\"confluence-information-macro-body\"><p><span style=\"color: rgb(102,102,102);\">Shinagare, A. B., Vikram, R., Jaffe, C., Akin, O., Kirby, J., Huang, E., Freymann, J., Sainani, N. I., Sadow, C. A., Bathala, T. K., Rubin, D. L., Oto, A., Heller, M. T., Surabhi, V. R., Katabathina, V., &amp; Silverman, S. G. (2015). <strong>Radiogenomics of clear cell renal cell carcinoma: preliminary findings of The Cancer Genome Atlas\u2013Renal Cell Carcinoma (TCGA\u2013RCC) Imaging Research Group<\/strong>. Abdominal Imaging, 40(6), 1684\u20131692. <a href=\"https:\/\/doi.org\/10.1007\/s00261-015-0386-z\" class=\"external-link\" rel=\"nofollow\">https:\/\/doi.org\/10.1007\/s00261-015-0386-z<\/a> <\/span><\/p><\/div><\/div><h3 id=\"RadiogenomicsofClearCellRenalCellCarcinoma:PreliminaryFindingsofTheCancerGenomeAtlasRenalCellCarcinoma(TCGARCC)ResearchGroup(TCGAKIRCRadiogenomics)-OtherPublicationsUsingThisData\">Other Publications Using This Data<\/h3><p><span>TCIA maintains<\/span> <a rel=\"nofollow\" class=\"external-link\" href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\"> a list of publications<\/a> <span> that leverage TCIA data. <\/span> If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\" class=\"external-link\" rel=\"nofollow\"> contact the TCIA Helpdesk<\/a>.<\/p><\/div><div class=\"tabs-pane \" id=\"19038592d04970eb3f32445b8cce22c997998e2f\" name=\"Versions\" ><h3 id=\"RadiogenomicsofClearCellRenalCellCarcinoma:PreliminaryFindingsofTheCancerGenomeAtlasRenalCellCarcinoma(TCGARCC)ResearchGroup(TCGAKIRCRadiogenomics)-Version1(Current):2015\/05\/28\">Version 1 (Current): 2015\/05\/28<\/h3><div class=\"table-wrap\"><table class=\"wrapped fixed-table confluenceTable\"><colgroup> <col style=\"width: 217.0px;\"\/> <col style=\"width: 232.0px;\"\/> <\/colgroup><tbody><tr><th class=\"confluenceTh\">Data Type<\/th><th class=\"confluenceTh\">Download all or Query\/Filter<\/th><\/tr><tr><td class=\"confluenceTd\">Image Data (DICOM)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/19038592\/doiJNLP-DG2Mvxzc.tcia?version=1&amp;modificationDate=1585592240179&amp;api=v2\" data-linked-resource-id=\"70222905\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"doiJNLP-DG2Mvxzc.tcia\" data-linked-resource-content-type=\"application\/x-nbia-manifest-file\" data-linked-resource-container-id=\"19038592\" data-linked-resource-container-version=\"20\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Radiogenomics%20of%20Clear%20Cell%20Renal%20Cell%20Carcinoma:%20Preliminary%20Findings%20of%20The%20Cancer%20Genome%20Atlas-Renal%20Cell%20Carcinoma%20(TCGA-RCC)%20Research%20Group%20(TCGA-KIRC-Radiogenomics)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><\/tr><tr><td class=\"confluenceTd\">Supplemental Data (CSV)<\/td><td class=\"confluenceTd\"><div class=\"content-wrapper\"><p><a href=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/19038592\/FullDataforAnalysis071714.csv?version=1&amp;modificationDate=1432827697743&amp;api=v2\" data-linked-resource-id=\"21692420\" data-linked-resource-version=\"1\" data-linked-resource-type=\"attachment\" data-linked-resource-default-alias=\"FullDataforAnalysis071714.csv\" data-linked-resource-content-type=\"text\/csv\" data-linked-resource-container-id=\"19038592\" data-linked-resource-container-version=\"20\"><span class=\"confluence-embedded-file-wrapper confluence-embedded-manual-size\"><img class=\"confluence-embedded-image confluence-thumbnail\" draggable=\"false\" height=\"30\" src=\"https:\/\/wiki.cancerimagingarchive.net\/download\/attachments\/embedded-page\/DOI\/Radiogenomics%20of%20Clear%20Cell%20Renal%20Cell%20Carcinoma:%20Preliminary%20Findings%20of%20The%20Cancer%20Genome%20Atlas-Renal%20Cell%20Carcinoma%20(TCGA-RCC)%20Research%20Group%20(TCGA-KIRC-Radiogenomics)\/tcia_wiki_download_button.png?api=v2\"><\/span><\/a><\/p><\/div><\/td><\/tr><\/tbody><\/table><\/div><\/div><\/div><\/div><\/div><\/div>","make_new_version_button":"","related_collections":["TCGA-KIRC"],"result_doi":"http:\/\/doi.org\/10.7937\/K9\/TCIA.2014.K6M61GDW","versions":false,"cancer_locations":["Kidney"],"publications_related":"","result_download_info":"Click the\u00a0<strong>Download<\/strong> \u00a0button\u00a0to save a \".tcia\" manifest file to your computer, which you must open with the\u00a0 <a href=\"https:\/\/wiki.cancerimagingarchive.net\/display\/NBIA\/Downloading+TCIA+Images\">NBIA Data Retriever<\/a>\n\nPlease contact <a href=\"mailto:help@cancerimagingarchive.net\">help@cancerimagingarchive.net<\/a>\u00a0 with any questions regarding usage.\n<strong>Collections Used in this Third Party Analysis<\/strong><br\/>Below is a list of the Collections used in these analyses:\n<ul><li><a href=\"https:\/\/doi.org\/10.7937\/K9\/TCIA.2016.V6PBVTDR\">TCGA-KIRC<\/a><\/li><\/ul>","result_downloads":[5364,5365],"result_page_accessibility":"Public","version_change_log_archived":"","additional_resources":"","date_updated":"2015-05-28","publications_using":"TCIA maintains <a href=\"https:\/\/www.cancerimagingarchive.net\/publications\/\"> a list of publications<\/a>  that leverage TCIA data.  If you have a manuscript you'd like to add please<a href=\"http:\/\/www.cancerimagingarchive.net\/support\/\"> contact the TCIA Helpdesk<\/a>.","result_title":"Radiogenomics of Clear Cell Renal Cell Carcinoma: Preliminary Findings of The Cancer Genome Atlas-Renal Cell Carcinoma (TCGA-RCC) Research Group","subjects":"103","detailed_description":"","result_short_title":"TCGA-KIRC-Radiogenomics","supporting_data":["Radiologist assessments of image features"],"version_change_log":"","collections":"","result_browse_title":"","version_number":[],"collection_downloads":false,"result_summary":"<h4>PURPOSE:<\/h4>","result_featured_image":false,"result_acknowledgements":"","hide_from_browse_table":[],"_links":{"self":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/analysis-results\/5748"}],"collection":[{"href":"https:\/\/cm.vastapps.dev\/api\/v1\/analysis-results"}],"about":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/types\/tcia_analysis_result"}],"wp:attachment":[{"href":"https:\/\/cm.vastapps.dev\/api\/wp\/v2\/media?parent=5748"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}