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ISBI-MR-PROSTATE-2013

ISBI-MR-Prostate-2013 | NCI-ISBI 2013 Challenge: Automated Segmentation of Prostate Structures

DOI: http://doi.org/10.7937/K9/TCIA.2015.zF0vlOPv | Page Accessibility: Public | Analysis Result

Analysis Result Snapshot
Cancer Types Location Subjects Related Collections Supporting Data Updated
Prostate Prostate 80 Prostate structure segmentations 08/20/2015

Summary

This data set was created for use in the NCI-ISBI 2013 Challenge – Automated Segmentation of Prostate Structures.  The challenge data set was divided into 3 parts including training, leaderboard and test data sets.  This allowed participants to prepare their algorithms and test their results prior to submitting to a final test phase for selecting the winner.
Image data were selected from PROSTATE-DIAGNOSIS and Prostate-3T collections on TCIA.  Cases consist of axial scans with half obtained at 1.5 T (Philips Achieva) with an endo-rectal receiver coil (fromBostonMedicalCenter) and the other half at 3T (Siemens TIM) with a surface coil (from Radboud University Nijmegen Medical Centre [RUNMC],Netherlands). They were acquired as T2-weighted MR axial pulse sequences with either 4 mm thick slices at 3T or 3 mm thick at 1.5T. Each file contains nearly all DICOM acquisition parameters except tags that specifically identify Private Health Information.
Each case has had central gland (CG) and peripheral zone (PZ) outlines marked by Drs. Nicolas Bloch (Boston University School of Medicine) and Mirabela Rusu (Case Western University) or Drs. Henkjan Huisman, Geert Litjens, or Jurgen Futterer at RUNMC Netherlands.

Data Access

Please contact [email protected]  with any questions regarding usage.
Collections Used in this Third Party Analysis
Below is a list of the Collections used in these analyses:

Title Data Type Format Access Points Studies Series Images License
Image Data - Training DICOM CC BY 3.0
Image Data - Leaderboard DICOM CC BY 3.0
Image Data - Test DICOM CC BY 3.0
NCI Challenge Data - Training NRRD CC BY 3.0
NCI Challenge Data - Leaderboard NRRD CC BY 3.0
NCI Challenge Data - Test NRRD CC BY 3.0

Detailed Description

Training Data can be further split by source Collection:

Citations & Data Usage Policy

Data Citation

Bloch N, Madabhushi A, Huisman H, Freymann J, Kirby J, Grauer M, Enquobahrie A, Jaffe C, Clarke L, Farahani K. (2015). NCI-ISBI 2013 Challenge: Automated Segmentation of Prostate Structures. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2015.zF0vlOPv

TCIA Citation

Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045–1057). Springer Science and Business Media LLC. https://doi.org/10.1007/s10278-013-9622-7

Other Publications Using This Data

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Collections Used In This Analysis Result

Collections Used In This Analysis Result